Re: [AMBER] thermodynamic integration on protein mutation

From: case <case.biomaps.rutgers.edu>
Date: Mon, 26 Sep 2011 22:22:06 -0400

On Mon, Sep 26, 2011, Jorge Iulek wrote:
>
> I wonder whether it might be sensible to calculate a delta(deltaG)
> of a protein mutated (compared to the native one) to bind to a certain
> ligand through thermodynamic integration. The set up I imagine closest
> is the one at tutorial A9, but with receptor and ligand roles inverted.
> Is this sensible?

It is indeed sensible, and often done.

...dac


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Received on Mon Sep 26 2011 - 19:30:05 PDT
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