Hi,
It looks like you may have applied the same bugfix twice. Although
previously applied patches should be recognized and skipped, this
doesn't always happen.
I recommend you start from a clean AmberTools 1.5, apply the bugfixes,
then compile. Let me know if you still have problems after that. Good
luck!
-Dan
On Sat, Sep 24, 2011 at 7:08 AM, George Tzotzos <gtzotzos.me.com> wrote:
> Following my earlier message and after some searching around I found that MacPorts did not install gcc_select.
>
> I did a quick and dirty job (copied it from another installation and move it to /opt/local/bin).
>
> Then
>
> $ sudo gcc_select mp-gcc44
> Selecting version "mp-gcc44" for gcc
>
> I proceed then to configure AmberTools. Then in the make install I get a number of errors of the type
>
> io.c:782: error: conflicting types for 'gzipFileSize'
> io.c:681: note: previous definition of 'gzipFileSize' was here
> io.c:814: error: conflicting types for 'bzip2FileSize'
> io.c:728: note: previous definition of 'bzip2FileSize' was here
>
> Would appreciate any help in solving this one.
>
> George
>
>
> On Sep 24, 2011, at 11:41 AM, George Tzotzos wrote:
>
>> Hi everybody,
>>
>> Recently I lost my hard drive and, alas, my Amber11 installation.
>>
>> I've been trying to repeat the steps of my last installation which were taken to a large extent from http://amberonmac.blogspot.com/2010/04/step-by-step-ambertools-14-installation.html
>>
>> I'm installing gcc44 from MacPorts
>>
>> sudo port install gcc44
>> ..............
>> ---> Installing gcc_select .0.1_5
>> ---> Activating gcc_select .0.1_5
>> ---> Cleaning gcc_select
>> ...............
>> ---> Installing gcc44 .4.4.6_0
>> ---> Activating gcc44 .4.4.6_0
>> ---> Cleaning gcc44
>>
>> Then do
>>
>> sudo port install gcc_select
>> ---> Cleaning gcc_select
>>
>> But doing
>>
>> sudo gcc_select mp-gcc44
>>
>> returns
>>
>> Error: Port mp-gcc44 not found
>>
>> This never happened in the past and I've done 3 different installations following this routine.
>>
>> I'm using OSX 10.6.5 on a Mac Pro 12 core machine.
>>
>> Needless to say that your help in overcoming this problem will be invaluable
>>
>> Thanks in advance
>>
>> George
>>
>>
>>
>>
>>
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>> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Sat Sep 24 2011 - 06:00:03 PDT
