Dear Sir,
I have just finished installing AMBER.
I was trying to do tutorial for using ANTECHAMBER at
http://ambermd.org/tutorials/basic/tutorial4b/
while giving the command:
antechamber -i sustiva_new.pdb -fi pdb -o sustiva.mol2 -fo mol2 -c bcc -s 2
and the output is:
Running: /usr/local/amber11/bin/bondtype -j full -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac
Running: /usr/local/amber11/bin/atomtype -i ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff
Total number of electrons: 160; net charge: 0
Running: /usr/local/amber11/bin/sqm -O -i sqm.in -o sqm.out
Running: /usr/local/amber11/bin/am1bcc -i ANTECHAMBER_AM1BCC_PRE.AC -o ANTECHAMBER_AM1BCC.AC -f ac -p /usr/local/amber11/dat/antechamber/BCCPARM.DAT -s 2 -j 1
Running: /usr/local/amber11/bin/atomtype -f ac -p bcc -o ANTECHAMBER_AM1BCC.AC -i ANTECHAMBER_AM1BCC_PRE.AC
It is not giving
Running: /usr/local/amber10/bin/mopac.sh
as given in the tutorial, but it is giving the correct ouput file.
Is this an error ?
If still some files are left for installation ? please hel
Thanks and Regards
--
Sonali Dhindwal
“Live as if you were to die tomorrow. Learn as if you were to live forever.”
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Received on Mon Sep 05 2011 - 14:30:07 PDT
