[AMBER] How to use WHAM to analysis Replica Exchange Simulations

From: Catein Catherine <askamber23.hotmail.com>
Date: Tue, 6 Sep 2011 22:20:41 +0800

Dear Sir/Madam,
Any tutorial to teach us how to get PMF energy profile from Replica Exchange Simulations? I learn from previous message in this forum that I can use WHAM, how to incorporate the temperature factor in the analysis?
I studied tutorial a7, but it did not include the energy analysis part. Any reference should I read?
Best regards,
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Received on Tue Sep 06 2011 - 07:30:06 PDT
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