[AMBER] hydrogen boding and PBC

From: Vijay Manickam Achari <vjrajamany.yahoo.com>
Date: Tue, 6 Sep 2011 11:19:02 +0100 (BST)

Dear sir,
 
Here I would like to get some info
about calculating hydrogen bonding. I am simulating bilayer
system and interested in calculating hydrogen bonding. I use
command "hbond distance 4.0 angle 120.0 out HB_highLyo.tbl"

Lately I came to know that I have to take the PBC condition
into consideration while calculating hydrogen bonding. May I
know is there any special command to use for considering
PBC?


Thanks in advance.
 
Vijay Manickam Achari
(Phd Student c/o Prof Rauzah Hashim)
Chemistry Department,
University of Malaya,
Malaysia
vjramana.gmail.com


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Sep 06 2011 - 03:30:02 PDT
Custom Search