Hi All,
I was successfully installed amber serial version, and want to compile a
parallel version in my cluster. I download and install openmpi 1.4.3 with
no warning and error message. I had impi installed before, but when I
configure it, it did not have mf90, this is the reason to install openmpi.
I checked the mpirun, from the date, it showed me that is the one I just
compiled. My OS is Red hat Enterprise Linux Server release 5.4. But when I
run configure, I got the error message:
....
Configuring Parallel NetCDF; (may be time-consuming)
Error: parallel NetCDF configure returned 77
Parallel NetCDF configure failed! Check the pnetcdf/config.log file.
Continuing but parallel NetCDF will be skipped.
Configuring NetCDF; (may be time-consuming)
NetCDF configure succeeded.
Configuring fftw-2.1.5; (may be time-consuming)
Error: fftw configure returned 1
fftw configure failed! Check the fftw2_config.log file.
Then I checked fftw2_config.log file. There are some error message in the
end:
......
checking whether gcc accepts "-fkeep-programmers-inline"... no
checking whether gcc accepts "-vomit-frame-pointer"... no
checking for mpicc... mpicc
checking for MPI_Init... no
checking for MPI_Init in -lmpi... no
checking for MPI_Init in -lmpich... no
configure: error: couldn't find mpi library for --enable-mpi
file.: No such file or directory
I am stuck here. Could anybody give me some clue that where it could be
wrong?
Thanks,
William
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Received on Mon Sep 12 2011 - 10:30:02 PDT
