Amber Archive May 2014 by thread
- Re: [AMBER] How to extract each frame of a trajectory as individual .mdcrd files? Yew Mun Yip (Wed Apr 30 2014 - 09:05:39 PDT)
- [AMBER] Problems with the Amber-14 compilation with CUDA-5.5 James Starlight (Thu May 01 2014 - 00:03:22 PDT)
- Re: [AMBER] Problems during installation of amber-14 with cuda-5 on GTX 670 James Starlight (Thu May 01 2014 - 02:05:27 PDT)
- [AMBER] Parameters for FAD amin.imtech.res.in (Thu May 01 2014 - 06:26:59 PDT)
- [AMBER] solvating molecule kirtana S (Thu May 01 2014 - 18:26:36 PDT)
- [AMBER] Prepareing branched residue kurisaki (Thu May 01 2014 - 22:57:23 PDT)
- [AMBER] Intermittent error during T-REMD on 8 GPU computer Milo Westler (Fri May 02 2014 - 07:33:48 PDT)
- [AMBER] Percent Occupancey with PCA Nicole Ippolito (Fri May 02 2014 - 08:17:34 PDT)
- [AMBER] alanine scanning Nitin Sharma (Sat May 03 2014 - 06:47:35 PDT)
- [AMBER] vlimit exceeded error when switch from NPT to NVE Quynh Vo (Sat May 03 2014 - 22:39:22 PDT)
- [AMBER] sander? sammia khatak (Sat May 03 2014 - 23:37:16 PDT)
- [AMBER] Questions about nmode Command 张明焜 (Sun May 04 2014 - 00:59:01 PDT)
- [AMBER] Fwd: Re: [q4md-fft] FAD parameters from F-90 FyD (Sun May 04 2014 - 22:02:54 PDT)
- Re: [AMBER] how to protonate phosphate groups of nucleotides FyD (Sun May 04 2014 - 22:19:14 PDT)
- [AMBER] acpype on ambertools13 Ahmet yıldırım (Mon May 05 2014 - 01:08:22 PDT)
- [AMBER] psf generation sammia khatak (Mon May 05 2014 - 01:44:42 PDT)
- [AMBER] Empirical force fields: release new version of RED Server Dev/PyRED FyD (Mon May 05 2014 - 04:00:11 PDT)
- Re: [AMBER] Extract velocity from the restart file Yin, Guowei (Mon May 05 2014 - 06:39:17 PDT)
- [AMBER] Extract MD co-ordinates Soumendranath Bhakat (Mon May 05 2014 - 07:19:14 PDT)
- [AMBER] Installation of AmberTools13 fabien.ibanez.modis.fr.netgrs.com (Mon May 05 2014 - 08:11:56 PDT)
- [AMBER] Percent Occupancy with PCA Nicole Ippolito (Mon May 05 2014 - 08:25:26 PDT)
- [AMBER] PMF as a function of Q, fraction of native contacts Nihal Korkmaz (Mon May 05 2014 - 15:47:13 PDT)
- [AMBER] handling long trajs for PCA and components plot newamber list (Mon May 05 2014 - 16:23:26 PDT)
- [AMBER] Regarding Calculation of Hydrogen Bond Energy MOHD HOMAIDUR RAHMAN (Mon May 05 2014 - 23:30:05 PDT)
- [AMBER] Problem with the amber-14 compilation on Debian James Starlight (Tue May 06 2014 - 00:09:37 PDT)
- [AMBER] Pairwise interaction energy between each residue MOHD HOMAIDUR RAHMAN (Tue May 06 2014 - 00:28:04 PDT)
- [AMBER] Membrane protein simulation James Starlight (Tue May 06 2014 - 03:15:29 PDT)
- [AMBER] number of frames in MMPBGBSA Nitin Sharma (Tue May 06 2014 - 05:15:24 PDT)
- [AMBER] dihedrals in CYT residue Sidney Elmer (Tue May 06 2014 - 10:04:16 PDT)
- [AMBER] Fwd: Re: Amber webminar Adrian Roitberg (Tue May 06 2014 - 11:55:07 PDT)
- [AMBER] Processing a subset of mdcrd frames Eugene Yedvabny (Tue May 06 2014 - 13:34:19 PDT)
- [AMBER] MMPBSA & mmpbsa_py_nabnmode frequent crashes Amir Shahmoradi (Tue May 06 2014 - 17:07:45 PDT)
- [AMBER] how to generate a complete amino acid in suitable for the vacuum simulation 张明焜 (Tue May 06 2014 - 20:38:49 PDT)
- [AMBER] PDB for 1-octanol molecules Mari Mak (Tue May 06 2014 - 23:13:18 PDT)
- [AMBER] Amber12 parallel installation error with MPICH2 UBUNTU 14.04 M. Reza Ganjalikhany (Wed May 07 2014 - 01:32:52 PDT)
- [AMBER] Simulations using pmemd.cuda James Starlight (Wed May 07 2014 - 02:31:53 PDT)
- [AMBER] "cudaDeviceEnablePeerAccess all CUDA-capable devices are busy or unavailable" ahmed.sajid.stfc.ac.uk (Wed May 07 2014 - 02:46:13 PDT)
- [AMBER] re-imaging bilayer Vijay Manickam Achari (Wed May 07 2014 - 05:00:14 PDT)
- [AMBER] FapydG parameters Norbert GARNIER (Wed May 07 2014 - 05:30:27 PDT)
- [AMBER] error in equilibration Lara rajam (Wed May 07 2014 - 07:03:23 PDT)
- [AMBER] Fwd: Re: PDB for 1-octanol molecules FyD (Wed May 07 2014 - 08:16:17 PDT)
- [AMBER] Question about structure factor? Xiaoquan Sun (Wed May 07 2014 - 13:33:53 PDT)
- [AMBER] Modeling systems with non-standard residues James Starlight (Wed May 07 2014 - 23:43:15 PDT)
- [AMBER] Error: invalid argument launching kernel kNLGenerateSpatialHash ASFARINA AMIR HASSAN (Thu May 08 2014 - 01:31:27 PDT)
- [AMBER] syntax error and nab2c failed when using NAB Dongshan Wei (Thu May 08 2014 - 02:23:18 PDT)
- [AMBER] Defining memory for QM/MM calculations Kshatresh Dutta Dubey (Thu May 08 2014 - 02:40:48 PDT)
- [AMBER] sqm convergence failure Hannes Loeffler (Thu May 08 2014 - 03:16:06 PDT)
- [AMBER] SolvateBox command George Patargias (Thu May 08 2014 - 03:50:34 PDT)
- [AMBER] valve of VDW too high David Chen (Thu May 08 2014 - 04:28:25 PDT)
- [AMBER] creating quadruplex structure with NAB Ander (Thu May 08 2014 - 05:12:41 PDT)
- [AMBER] mmpbsa: the nmode calculation Fengxue Li (Thu May 08 2014 - 06:41:53 PDT)
- [AMBER] softcore potential flag Asaminew Haile (Thu May 08 2014 - 07:37:23 PDT)
- [AMBER] Alanine Scanning MMPBSA Aronica, Pietro (Thu May 08 2014 - 08:56:28 PDT)
- [AMBER] Analysis of minimization stage Valentina Romano (Thu May 08 2014 - 09:04:41 PDT)
- [AMBER] Regarding Calculation of Hydrogen Bond Energy MOHD HOMAIDUR RAHMAN (Thu May 08 2014 - 11:00:50 PDT)
- [AMBER] mmpbsa: the nmode calculation Fengxue Li (Thu May 08 2014 - 23:11:07 PDT)
- [AMBER] multinode NPT runs on GPU Sourav Purohit (Fri May 09 2014 - 05:50:19 PDT)
- [AMBER] Siginificance of delta G Arunima Shilpi (Fri May 09 2014 - 06:09:27 PDT)
- [AMBER] delta Ggas and Delta Gsolv Arunima Shilpi (Fri May 09 2014 - 06:31:29 PDT)
- [AMBER] Analysis of evecs.dat file Ibrahim Said (Fri May 09 2014 - 09:58:22 PDT)
- [AMBER] pmemd.MPI failure George Tzotzos (Fri May 09 2014 - 10:59:53 PDT)
- [AMBER] Error when using PB implicit solvent in XMIN in NAB(PB Bomb in pb_init(): Allocation aborted) Guqin Shi (Fri May 09 2014 - 11:44:03 PDT)
- [AMBER] AMBER : mmpbsa rms in nmode Fengxue Li (Sat May 10 2014 - 05:54:29 PDT)
- [AMBER] Additional random motion of com for unwrapped trajectory Sourav Purohit (Sat May 10 2014 - 16:23:18 PDT)
- [AMBER] Analysis of the mmpbsa output James Starlight (Sun May 11 2014 - 00:43:44 PDT)
- [AMBER] Inputs QM/MM MD and MMGBSA Soumendranath Bhakat (Sun May 11 2014 - 12:57:16 PDT)
- [AMBER] Amber workshops coming soon ? Saba Sulaiman (Sun May 11 2014 - 22:51:22 PDT)
- [AMBER] problem with nmode Fengxue Li (Mon May 12 2014 - 01:54:07 PDT)
- [AMBER] Force field of antechamber , parm94 ? parm99? Jinfeng Huang (Mon May 12 2014 - 02:22:57 PDT)
- [AMBER] QM/MM tutorial James Starlight (Mon May 12 2014 - 02:32:14 PDT)
- [AMBER] about GPU memory requirements Thomas Evangelidis (Mon May 12 2014 - 11:58:29 PDT)
- [AMBER] Recompile amber12 whit cuda 6.0 Hector A. Baldoni (Mon May 12 2014 - 12:00:36 PDT)
- [AMBER] get sqm Error when run antechamber Biao Ma (Mon May 12 2014 - 23:44:04 PDT)
- [AMBER] Urgent: unable to generate files Faez Iqbal khan (Tue May 13 2014 - 01:20:43 PDT)
- [AMBER] REMD velocity information Saikat Dutta Chowdhury (Tue May 13 2014 - 05:05:08 PDT)
- [AMBER] exctracting indivdual frames into seperate files Nitin Sharma (Tue May 13 2014 - 05:54:09 PDT)
- [AMBER] Installation AmberTools13 fabien.ibanez.modis.fr.netgrs.com (Tue May 13 2014 - 07:30:53 PDT)
- [AMBER] Scaling of atomic mass of water molecules Manikanthan Bhavaraju (Tue May 13 2014 - 07:51:44 PDT)
- [AMBER] Need help as a beginner MURAT OZTURK (Tue May 13 2014 - 12:31:59 PDT)
- [AMBER] Installation Problem of AmberTools14 ujihara.ryuuta.47u.st.kyoto-u.ac.jp (Tue May 13 2014 - 21:54:10 PDT)
- [AMBER] AmberTools 14 compilation on OSX fails Fabian Glaser (Wed May 14 2014 - 01:48:08 PDT)
- [AMBER] thermodynamic integration (TI) simulation: pmemd of amber14 vs sander of amber11- vdw transformation Ying-Chieh Sun (Wed May 14 2014 - 03:21:17 PDT)
- [AMBER] Protocol for multiple CPU+ single GPU run on a single node, MURAT OZTURK (Wed May 14 2014 - 07:49:16 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, Jason Swails (Wed May 14 2014 - 08:17:32 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, Ross Walker (Wed May 14 2014 - 08:57:33 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, MURAT OZTURK (Wed May 14 2014 - 10:13:25 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, Jason Swails (Wed May 14 2014 - 10:34:53 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, Ross Walker (Wed May 14 2014 - 10:39:22 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, Scott Le Grand (Wed May 14 2014 - 11:10:13 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, MURAT OZTURK (Wed May 14 2014 - 11:35:26 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, Ross Walker (Wed May 14 2014 - 11:49:41 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, MURAT OZTURK (Wed May 14 2014 - 12:22:24 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, James Maier (Wed May 14 2014 - 12:30:08 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, Jason Swails (Wed May 14 2014 - 12:33:13 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, MURAT OZTURK (Wed May 14 2014 - 12:41:37 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, Ross Walker (Wed May 14 2014 - 12:49:10 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, David A Case (Wed May 14 2014 - 13:13:19 PDT)
- Re: [AMBER] Protocol for multiple CPU+ single GPU run on a single node, Ross Walker (Wed May 14 2014 - 12:36:11 PDT)
- [AMBER] TI(amber14's pmemd.cuda) on GPUs RE: thermodynamic integration (TI) simulation: pmemd of amber14 vs sander of amber11- vdw transformation Ying-Chieh Sun (Wed May 14 2014 - 20:42:24 PDT)
- [AMBER] Error: Could not compile with NetCDF Fortran interface gfortran-4.7 and amber14 Ben.Cossins.ucb.com (Thu May 15 2014 - 04:22:44 PDT)
- [AMBER] ALA and NALA charges in Amber03 and Amber99 Rossen Apostolov (Thu May 15 2014 - 07:05:22 PDT)
- [AMBER] sander and processor sammia khatak (Thu May 15 2014 - 07:09:14 PDT)
- [AMBER] when nastruct does NOT print the basepair information newamber list (Thu May 15 2014 - 07:52:04 PDT)
- [AMBER] pairwise option in cpptraj newamber list (Thu May 15 2014 - 10:25:28 PDT)
- [AMBER] torsion restraints not defined properly? Duggan, Brendan (Thu May 15 2014 - 10:55:29 PDT)
- [AMBER] AMBER Workshop Jun 2nd to 6th - Barcelona - Small number of additional places available. Ross Walker (Thu May 15 2014 - 12:03:04 PDT)
- Re: [AMBER] AMBER Digest, Vol 855, Issue 1 Duggan, Brendan (Thu May 15 2014 - 12:18:17 PDT)
- [AMBER] acetylated lysine - OXT berin karaman (Fri May 16 2014 - 01:00:48 PDT)
- [AMBER] parmchk2 segfaults Hannes Loeffler (Fri May 16 2014 - 06:50:54 PDT)
- Re: [AMBER] Help with ptraj RDF/ion coordination shells/number of ions within regions Ben Ahmady (Fri May 16 2014 - 07:29:42 PDT)
- [AMBER] Problem with Decomposition of Binding Free Energy loue chen (Fri May 16 2014 - 12:08:46 PDT)
- Re: [AMBER] Saturday Bill Ross (Fri May 16 2014 - 13:08:11 PDT)
- [AMBER] How to plot Eigenvectors against % Positional Fluctuations Yip Yew Mun (Fri May 16 2014 - 21:09:18 PDT)
- [AMBER] Problem in generating xml param files Sushi Shilpa (Fri May 16 2014 - 23:06:18 PDT)
- [AMBER] error in minimization Sajda Ashraf (Fri May 16 2014 - 23:48:21 PDT)
- [AMBER] MMPBSA Soumya Lipsa Rath (Sat May 17 2014 - 03:04:38 PDT)
- [AMBER] Extending MMPBSA Arun Kumar Somavarapu (Sat May 17 2014 - 04:50:44 PDT)
- [AMBER] Script for Calculating RMSIP Yip Yew Mun (Sat May 17 2014 - 08:54:30 PDT)
- [AMBER] Bad prmtop during density run Kshatresh Dutta Dubey (Sat May 17 2014 - 09:17:03 PDT)
- [AMBER] Unit cell vectors are NOT rotated; imaging will not be possible newamber list (Sat May 17 2014 - 09:41:38 PDT)
- [AMBER] QM/MM based binding free energy analysis AMBER Soumendranath Bhakat (Sun May 18 2014 - 12:29:58 PDT)
- [AMBER] Abdullahi Abubakar invited you to check out Dropbox Dropbox (Sun May 18 2014 - 18:58:02 PDT)
- [AMBER] Fwd: MMPBSA Soumya Lipsa Rath (Sun May 18 2014 - 22:19:18 PDT)
- [AMBER] sander restart sammia khatak (Sun May 18 2014 - 23:57:15 PDT)
- [AMBER] antechamber with Au atom giulia palermo (Mon May 19 2014 - 00:24:50 PDT)
- [AMBER] can “NAB: Molecular mechanics and dynamics” do qmmm caculation? 张明焜 (Mon May 19 2014 - 01:59:42 PDT)
- [AMBER] About the reproducibility of pmemd Val Yu (Mon May 19 2014 - 05:01:48 PDT)
- [AMBER] NH4+ Thomas Exner (Mon May 19 2014 - 05:31:56 PDT)
- [AMBER] Antechamber CHRISTOPHER PATRICK MCNARY (Mon May 19 2014 - 08:18:03 PDT)
- [AMBER] Problem in parallel version of pmemd.cuda Sanjib Paul (Mon May 19 2014 - 11:16:41 PDT)
- [AMBER] conversion force constant giulia palermo (Mon May 19 2014 - 12:26:04 PDT)
- [AMBER] Announcement: New GLYCAM-Web Lachele Foley (Mon May 19 2014 - 14:40:55 PDT)
- [AMBER] Constant protein diffusion across PB boundaties James Starlight (Tue May 20 2014 - 01:59:22 PDT)
- Re: [AMBER] SQM: How to extract the charge density of sqm runs? Marc van der Kamp (Tue May 20 2014 - 02:35:26 PDT)
- [AMBER] Trajectory analysis using pptraj James Starlight (Tue May 20 2014 - 08:05:38 PDT)
- [AMBER] Error in setting irest=1 Valentina Romano (Tue May 20 2014 - 09:14:07 PDT)
- [AMBER] csurften requirement for semiisotropic coupling Eric Hill (Tue May 20 2014 - 09:34:42 PDT)
- [AMBER] cant run ntp=3 without csurften Eric Hill (Tue May 20 2014 - 09:48:46 PDT)
- [AMBER] secondary structure calculation using Cpptraj Marlet Martinez (Tue May 20 2014 - 13:00:20 PDT)
- [AMBER] Attempting to modify Amber Nelson Max (Tue May 20 2014 - 17:47:39 PDT)
- [AMBER] error in mdcrd file Sajda Ashraf (Tue May 20 2014 - 22:48:42 PDT)
- [AMBER] Simulation of the protein with internal water James Starlight (Wed May 21 2014 - 05:39:02 PDT)
- [AMBER] Low energy path Hector A. Baldoni (Wed May 21 2014 - 05:40:27 PDT)
- [AMBER] Peptides moving out of the water box Ilias Patmanidis (Wed May 21 2014 - 06:47:39 PDT)
- [AMBER] Temperature rises to 4000K during NVT equilibration Indrajit Deb (Wed May 21 2014 - 06:55:46 PDT)
- [AMBER] Interactions across the periodic box boundaries Eugene Yedvabny (Wed May 21 2014 - 12:19:40 PDT)
- [AMBER] About the chamber in Ambertools 14 Yeng-Tseng Wang (Wed May 21 2014 - 18:23:14 PDT)
- [AMBER] antechamber error Sajda Ashraf (Thu May 22 2014 - 03:53:39 PDT)
- [AMBER] z-axis restraints Pierpaolo Cacciotto (Thu May 22 2014 - 06:49:37 PDT)
- [AMBER] mmpbsa zahra khatti (Thu May 22 2014 - 07:59:23 PDT)
- [AMBER] mmpbsa Lara rajam (Thu May 22 2014 - 11:41:16 PDT)
- [AMBER] prmtop error Lara rajam (Thu May 22 2014 - 12:08:41 PDT)
- [AMBER] in vacuo dynamics Massimiliano Porrini (Thu May 22 2014 - 12:52:26 PDT)
- [AMBER] Problem in loading leaprc.zinc amin.imtech.res.in (Thu May 22 2014 - 23:05:06 PDT)
- [AMBER] Secondary Structure Script Soumendranath Bhakat (Fri May 23 2014 - 03:45:42 PDT)
- [AMBER] SASA calculation Soumendranath Bhakat (Fri May 23 2014 - 05:07:53 PDT)
- [AMBER] SASA error Soumendranath Bhakat (Fri May 23 2014 - 06:31:13 PDT)
- [AMBER] compiling iAPBS and sander.APBS? Brian Radak (Fri May 23 2014 - 13:54:06 PDT)
- [AMBER] I want to know about formula of RESP Charge in the Amber Kim TaeHwan (Sat May 24 2014 - 08:43:39 PDT)
- Re: [AMBER] pbsa: solvation radius from topology file not used when radiopt=0 Jan-Philip Gehrcke (Sat May 24 2014 - 10:37:25 PDT)
- [AMBER] Topology and Corresponding PDB Amber Soumendranath Bhakat (Sat May 24 2014 - 12:39:49 PDT)
- [AMBER] Accelerated MD in Amber James Starlight (Sun May 25 2014 - 06:28:33 PDT)
- [AMBER] MD at constant pH and high temperature Sangita Kachhap (Sun May 25 2014 - 06:48:41 PDT)
- [AMBER] How to define the direction of the force in SMD method? Cuiyl (Sun May 25 2014 - 19:14:08 PDT)
- [AMBER] MD at pH5 and 50-55 degree celcius Sangita Kachhap (Sun May 25 2014 - 23:47:28 PDT)
- [AMBER] Loop refirement James Starlight (Mon May 26 2014 - 03:06:13 PDT)
- [AMBER] PCA and the corresponding pdb Ibrahim Said (Mon May 26 2014 - 11:54:38 PDT)
- [AMBER] OpenMM Performance (was Re: in vacuo dynamics) Jason Swails (Mon May 26 2014 - 15:35:44 PDT)
- [AMBER] MMPBSA: Per Residue vs Pairwise decomposition Calculation Rodriguez, Yoel (Mon May 26 2014 - 18:01:44 PDT)
- [AMBER] Residue Pairing ih MMPBSA calculation Arunima Shilpi (Mon May 26 2014 - 20:52:57 PDT)
- [AMBER] 3NKB5 王珍 (Tue May 27 2014 - 00:08:27 PDT)
- [AMBER] rmsd of multiple trajectories with different topologies and sizes but same reference Brian Radak (Tue May 27 2014 - 07:43:08 PDT)
- [AMBER] Disulfide Bond Info and XMIN Stuck Problems Guqin Shi (Tue May 27 2014 - 09:14:29 PDT)
- [AMBER] MMPBSA: Per Residue vs Pairwise decomposition Calculation(idecomp= 2 o idecomp=4) Rodriguez, Yoel (Tue May 27 2014 - 10:22:06 PDT)
- [AMBER] MMPBSA Hallel Freedman (Tue May 27 2014 - 11:05:32 PDT)
- [AMBER] print residue Arunima Shilpi (Tue May 27 2014 - 22:07:04 PDT)
- [AMBER] zinc partial charges Nash, Anthony (Tue May 27 2014 - 23:30:38 PDT)
- [AMBER] command to check non bonded interactions like vander waal's interactions Nitin Sharma (Wed May 28 2014 - 06:27:12 PDT)
- [AMBER] amber in namd Lara rajam (Wed May 28 2014 - 08:21:53 PDT)
- [AMBER] Contributing new water models Lee-Ping Wang (Wed May 28 2014 - 11:35:30 PDT)
- [AMBER] print residue Arunima Shilpi (Wed May 28 2014 - 22:07:29 PDT)
- [AMBER] Query regarding Amber Advance Tutorial 17 Kshatresh Dutta Dubey (Thu May 29 2014 - 01:54:51 PDT)
- [AMBER] MMPBSA_complex.mdcrd.0 error mahnam karim (Thu May 29 2014 - 07:03:58 PDT)
- [AMBER] protonate question 王珍 (Thu May 29 2014 - 17:45:24 PDT)
- Re: [AMBER] GTX780Ti consistent error "cudaMemcpy GpuBuffer::Download failed unspecified launch failure." Keiran Rowell (Thu May 29 2014 - 22:43:53 PDT)
- [AMBER] sudden and rapid configuration change in NVT simulation yjlee (Fri May 30 2014 - 01:44:46 PDT)
- [AMBER] Problem in restarting simulation from restart file Kshatresh Dutta Dubey (Fri May 30 2014 - 05:04:59 PDT)
- [AMBER] periodic box buffer zone Paulsen, Janet (Fri May 30 2014 - 08:35:34 PDT)
- [AMBER] amber in namd Lara rajam (Fri May 30 2014 - 08:46:40 PDT)
- [AMBER] Parametrization of non-standart residues James Starlight (Fri May 30 2014 - 11:12:33 PDT)
- [AMBER] request for help in plotting distance matrix plot Robin Jain (Fri May 30 2014 - 23:10:22 PDT)
- [AMBER] error in plot of interaction energy in xmgrace Arunima Shilpi (Sat May 31 2014 - 06:03:22 PDT)
- [AMBER] problem using pmemd.cuda with barostat=2 option Asaminew Haile (Sat May 31 2014 - 08:10:50 PDT)
- [AMBER] sander QM/MM with terachem using MPI Daniel Hollas (Sat May 31 2014 - 08:21:42 PDT)
- [AMBER] ff99SB-ildn-nmr Nihal Korkmaz (Sat May 31 2014 - 11:44:23 PDT)
- Last message date: Sat May 31 2014 - 12:30:02 PDT
- Archived on: Wed Apr 24 2024 - 05:54:56 PDT
