On Thu, May 08, 2014, Asaminew Haile wrote:
> I've an RNA molecule, with one single strand region and I would like do
> pulling by adding restraints. To do so, I need to turn on SOFTCORE
> potential. I'm aware of that in the amber manual, softcore potential is
> under the thermodynamic integration. I was wondering if someone has any
> idea how to use the softcore other than TI.
Amber's "softcore" may not be what you think it is. Ours only works in the
context of TI. (If I'm forgetting something, others on the list can chime
in.)
...dac
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Received on Thu May 08 2014 - 10:00:04 PDT
