[AMBER] How to plot Eigenvectors against % Positional Fluctuations

From: Yip Yew Mun <yipy0005.gmail.com>
Date: Sat, 17 May 2014 12:09:18 +0800

I understand that in protein MD simulations, the first 2 eigenvectors are usually taken into consideration since it should account for most of the protein�s motions. However, I would like to know how can I plot a graph of Eigenvectors against Positional Fluctuations so as to justify for my simulation that 2 principal components is indeed adequate to account for the protein�s motion?

Thanks.

Regards
Yip Yew Mun
Graduate, PhD
Chemistry and Biological Chemistry
School of Physical and Mathematical Sciences
Nanyang Technological University


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Received on Fri May 16 2014 - 21:30:03 PDT
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