Dear Amber users,
I am using Amber for first time, I am using Amber 12 and Amber 14 tools
now I am following the tutorials for Metal center parameter building (
http://ambermd.org/tutorials/advanced/tutorial20/section3.htm) I have
problem in 7th step that is generating final xml param files, forthis I
used the command like this MCPB -i 1AMP_OH_sidechain_fc_md.bcl -l
1AMP_OH_sidechain_fc_md.bcl.log
But i got error like Segmentation fault (core dumped), I dont know what is
the resason for this and the information in log file is this
### ### ### ###
### ### ### ###
### MTK++ Info ###
### Function: MCPB ###
### Message: readG03Output
### ### ### ###
### ### ### ###
### MTK++ Error ###
### Function: MCPB ###
### Message: Unknown command: "readG03Output"
### ### ### ###
### ### ### ###
### MTK++ Error ###
### Function: MCPB ###
### Message: Unknown command: "X"
### ### ### ###
### ### ### ###
### MTK++ Error ###
### Function: MCPB ###
### Message: Unknown command: "-"
### ### ### ###
### ### ### ###
### MTK++ Error ###
### Function: MCPB ###
### Message: Unknown command: "-"
### ### ### ###
### ### ### ###
### MTK++ Error ###
### Function: MCPB ###
### Message: Unknown command: "Y"
### ### ### ###
### ### ### ###
### MTK++ Error ###
### Function: MCPB ###
### Message: Unknown command: "-"
### ### ### ###
### ### ### ###
### MTK++ Error ###
### Function: MCPB ###
### Message: Unknown command: "-"
### ### ### ###
### ### ### ###
### MTK++ Info ###
### Function: MCPB ###
### Message: updateForceConstants
### ### ### ###
### ### ### ###
### MTK++ Info ###
### Function: selection::parse ###
### Message: selection string = /1AMP_OH/1AMP_OH
### ### ### ###
I would be greatfull if any one could suggest me something. Thanks in
advance.
Regards,
Shilpa T
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Received on Fri May 16 2014 - 23:30:02 PDT
