On Wed, 2014-05-14 at 11:48 +0300, Fabian Glaser wrote:
> Hi all,
>
> I am trying for a while to install AmberTools14 on my OSX 10.9.2, and I solved several issues, but still am not able to install it :-(
>
> Here is the last trial, can somebody please help me????
>
>
> ==========================================================
>
>
> fabian.fabians-imac { ..amber14 }-> ./configure -macAccelerate gnu
> Checking for updates...
> Checking for available patches online. This may take a few seconds...
>
> Available AmberTools 14 patches:
>
> No patches available
> Searching for python2... Found python2.7: /opt/local/bin/python2.7
>
> Obtaining the gnu suite version:
> gcc -v
> The version is version
> ./configure2: line 786: [: version: integer expression expected
> ./configure2: line 805: [: version: integer expression expected
> ./configure2: line 806: [: version: integer expression expected
This isn't good. What is the output of "gcc -v" in your terminal?
>
> Testing the gcc compiler:
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c
> ld: warning: directory not found for option '-L/Developer/SDKs/MacOSX10.5.sdk/usr/lib'
> OK
>
> Testing the g++ compiler:
> g++ -o testp testp.cpp
> ld: warning: directory not found for option '-L/Developer/SDKs/MacOSX10.5.sdk/usr/lib'
> OK
>
> Testing the gfortran compiler:
> gfortran -O0 -o testp testp.f
> OK
>
> Testing mixed C/Fortran compilation:
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o testp.c.o testp.c
> gfortran -O0 -c -o testp.f.o testp.f
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c.o testp.f.o -lgfortran -w -framework Accelerate
> Undefined symbols for architecture x86_64:
> "__gfortran_transfer_character_write", referenced from:
> _hello_ in testp.f.o
> ld: symbol(s) not found for architecture x86_64
> clang: error: linker command failed with exit code 1 (use -v to see invocation)
> ./configure2: line 1762: ./testp: No such file or directory
> Error: Unable to compile mixed C/Fortran code.
> Please check your compiler settings and configure flags.
> Configure failed due to the errors above!
Your compilers appear broken. Please follow the instructions here to
get your compilers set up properly: http://jswails.wikidot.com/mac-os-x
I think the instructions for Mac OS X 10.9 should be compatible with
10.8.
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Wed May 14 2014 - 05:00:05 PDT
