Hi all,
I am trying for a while to install AmberTools14 on my OSX 10.9.2, and I solved several issues, but still am not able to install it :-(
Here is the last trial, can somebody please help me????
==========================================================
fabian.fabians-imac { ..amber14 }-> ./configure -macAccelerate gnu
Checking for updates...
Checking for available patches online. This may take a few seconds...
Available AmberTools 14 patches:
No patches available
Searching for python2... Found python2.7: /opt/local/bin/python2.7
Obtaining the gnu suite version:
gcc -v
The version is version
./configure2: line 786: [: version: integer expression expected
./configure2: line 805: [: version: integer expression expected
./configure2: line 806: [: version: integer expression expected
Testing the gcc compiler:
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c
ld: warning: directory not found for option '-L/Developer/SDKs/MacOSX10.5.sdk/usr/lib'
OK
Testing the g++ compiler:
g++ -o testp testp.cpp
ld: warning: directory not found for option '-L/Developer/SDKs/MacOSX10.5.sdk/usr/lib'
OK
Testing the gfortran compiler:
gfortran -O0 -o testp testp.f
OK
Testing mixed C/Fortran compilation:
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o testp.c.o testp.c
gfortran -O0 -c -o testp.f.o testp.f
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c.o testp.f.o -lgfortran -w -framework Accelerate
Undefined symbols for architecture x86_64:
"__gfortran_transfer_character_write", referenced from:
_hello_ in testp.f.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
./configure2: line 1762: ./testp: No such file or directory
Error: Unable to compile mixed C/Fortran code.
Please check your compiler settings and configure flags.
Configure failed due to the errors above!
_______________________________
Fabian Glaser, PhD
Head of the Structural Bioinformatics section
Bioinformatics Knowledge Unit - BKU
The Lorry I. Lokey Interdisciplinary
Center for Life Sciences and Engineering
Technion - Israel Institute of Technology
Haifa 32000, ISRAEL
fglaser.technion.ac.il
Tel: +972 4 8293701
Fax: +972 4 8225153
_______________________________
Fabian Glaser, PhD
Head of the Structural Bioinformatics section
Bioinformatics Knowledge Unit - BKU
The Lorry I. Lokey Interdisciplinary
Center for Life Sciences and Engineering
Technion - Israel Institute of Technology
Haifa 32000, ISRAEL
fglaser.technion.ac.il
Tel: +972 4 8293701
Fax: +972 4 8225153
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Received on Wed May 14 2014 - 02:00:03 PDT
