Thank you very much David,
I am sorry my description was not clearly,
in my case, our cluster computer supplier was pre-installed the amber to
/usr/local/amber12 by root,
so I use root to update and re-compiler amber and AmberTools.
Others , I copy the amber12 dir to my home dir,
and first run " make clean", next do "./configure intel"-> "make
install".(this time the process is completed).
After the update, the antechamber error is fixed.
Best regards.
Biao
On Thu, May 15, 2014 at 8:52 PM, David A Case <case.biomaps.rutgers.edu>wrote:
> On Thu, May 15, 2014, Biao Ma wrote:
> >
> > I use root because I want install it for all users can use it.
>
> Don't do this! You can give access permissions to all users with no need
> to
> be root. (E.g. chmod -R o+rx amber14.)
>
> We don't know of bugs in the Amber install process, but that doesn't mean
> that
> something bad can't happen.
>
> (Mainly posting this for the benefit of others who may be tempted to
> install
> Amber as root.)
>
> ...dac
>
>
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Received on Fri May 16 2014 - 01:00:02 PDT
