Re: [AMBER] Analysis of minimization stage

From: Jason Swails <jason.swails.gmail.com>
Date: Mon, 12 May 2014 10:18:47 -0400

On Mon, 2014-05-12 at 09:59 -0400, David A Case wrote:
> On Mon, May 12, 2014, Valentina Romano wrote:
> >
> > CPPTRAJ: Trajectory Analysis. V13.22
> > ___ ___ ___ ___
> > | \/ | \/ | \/ |
> > _|_/\_|_/\_|_/\_|_
> > AmberParm Title: [default_name]
> > Radius Set: modified Bondi radii (mbondi)
> > INPUT: Reading Input from file PknGAde-wt-min.check_overlap
> > [trajin PknGAde-wt-min.rst]
> > [PknGAde-wt-min.rst] contains 1 frames.
> > [checkoverlap]
>
> Try adding the "reportfile overlaps.dat" to the checkoverlap command.
> I'm always uncertain about when cpptraj writes things to stdout, and when
> they go to one of the data files.

Whenever I've used checkoverlaps before the report gets printed to
stdout...

-- 
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Mon May 12 2014 - 07:30:05 PDT
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