Re: [AMBER] AmberTools 14 compilation on OSX fails

From: Fabian Glaser <fglaser.technion.ac.il>
Date: Thu, 15 May 2014 15:50:01 +0300

But I will not destroy my system by uninstalling macports????

That is also a posibility....

Thanks a lot,

Fabian



On May 15, 2014, at 2:18 PM, Jason Swails <jason.swails.gmail.com> wrote:

> On Thu, 2014-05-15 at 08:42 +0300, Fabian Glaser wrote:
>> Hi Jason,
>>
>> I tried to follow carefully the instruction in the wikidot link you
>> sent me, macport and xcode and Xquartz and most packages needed were
>> installed correctly but there are still errors....
>>
>> But there is something that appears again and again regarding
>> llvm-3.1, which apparently is not compatible with mavericks.... and
>> therefore I cannot install for example gcc47:
>
> Have you done a "sudo port selfupdate" recently?
>>
>>> sudo port install gcc47
>> ---> Computing dependencies for llvm-3.1
>> ---> Fetching distfiles for llvm-3.1
>> Error: llvm-3.1 is not supported on Mavericks or later.
>> Error: org.macports.fetch for port llvm-3.1 returned: unsupported platform
>
> It sounds like you recently upgraded from an older Mac OS X (10.8,
> maybe?) to OS X 10.9, but kept your MacPorts installation around. As
> the error message says, llvm-3.1 is not supported on OS X 10.9.x, so you
> need to get MacPorts to use llvm-3.3 to satisfy the llvm requirements
> instead.
>
> You can follow some of the advice here:
> http://docs.gz.ro/macports-llvm33.html if it makes sense to you. You
> can also uninstall MacPorts
> (http://guide.macports.org/chunked/installing.macports.uninstalling.html) and then reinstall it (along with all of the ports). This is the approach I took when I upgraded my machine from OS X 10.8 to OS X 10.9.
>
> If MacPorts is set up correctly, you should not run into this problem.
>
> HTH,
> Jason
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber



_______________________________
Fabian Glaser, PhD

Head of the Structural Bioinformatics section
Bioinformatics Knowledge Unit - BKU

The Lorry I. Lokey Interdisciplinary
Center for Life Sciences and Engineering
Technion - Israel Institute of Technology
Haifa 32000, ISRAEL

fglaser.technion.ac.il
Tel: +972 4 8293701
Fax: +972 4 8225153


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu May 15 2014 - 06:00:02 PDT
Custom Search