Hi,
In my experience these kinds of NetCDF compilation errors happen when
non-standard compiler names are used (in this case gcc-4.7,
gfortran-4.7 etc). The NetCDF configure scripts set compilation flags
based on certain compiler names; when these names are different NetCDF
can sometimes have trouble. I can think of two potential workarounds:
1) Create soft-links that use the 'standard' gnu compiler names (gcc,
gfortran) in some directory that comes first in your PATH (e.g. ~/bin)
so that the NetCDF configure scripts run correctly (this would only
have to be done once prior to Amber configuration, i.e. it does not
have to be permanent). For example,
cd ~/bin
ln -s `which gcc-4.7` gcc
ln -s `which gfortran-4.7` gfortran
export PATH=~/bin:$PATH
2) If one is available, use a system-installed NetCDF via the
--with-netcdf flag.
For future releases we may need to hack the bundled NetCDF configure
scripts so they can deal with non-standard compiler names/compiler
wrappers.
Hope this helps,
-Dan
On Thu, May 15, 2014 at 5:22 AM, <Ben.Cossins.ucb.com> wrote:
> Dear all,
>
> I am trying to compile amber 14 on Suse enterprise 11 sp3 with gcc and gfortran 4.7 (option gnu).
>
> During configuration I get the following error related to compiling the NetCDF interface:-
>
> bcossins.slhlnxws004:~/Science-software/amber14_gnu> ./configure gnu
> Checking for updates...
> Checking for available patches online. This may take a few seconds...
>
> Available AmberTools 14 patches:
>
> No patches available
>
> Available Amber 14 patches:
>
> No patches available
> Searching for python2... Found python2.7: /home/bcossins/anaconda/bin/python2.7
>
> Obtaining the gnu suite version:
> gcc-4.7 -v
> The version is 4.7.2
>
> Testing the gcc-4.7 compiler:
> gcc-4.7 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c
> OK
>
> Testing the g++-4.7 compiler:
> g++-4.7 -o testp testp.cpp
> OK
>
> Testing the gfortran-4.7 compiler:
> gfortran-4.7 -O0 -o testp testp.f
> OK
>
> Testing mixed C/Fortran compilation:
> gcc-4.7 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o testp.c.o testp.c
> gfortran-4.7 -O0 -c -o testp.f.o testp.f
> gcc-4.7 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c.o testp.f.o -lgfortran -w
> OK
>
> Testing pointer size:
> gcc-4.7 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o test_pointer_size test_pointer_size.c
> Detected 64 bit operating system.
>
> Testing flex: OK
>
> Checking NetCDF...
> Using bundled NetCDF library.
> NetCDF must be rebuilt.
> Configuring NetCDF C interface (may be time-consuming)...
> Compiling the NetCDF C interface (may be time-consuming)...
> Configuring NetCDF Fortran interface (may be time-consuming)...
> Compiling the NetCDF Fortran interface (may be time-consuming)...
> Error: Could not compile with NetCDF Fortran interface.
> Compile error follows:
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_eightbyteint':
> netcdf.f90:(.text+0xbf): undefined reference to `nf_get_var1_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_eightbyteint':
> netcdf.f90:(.text+0x1b6): undefined reference to `nf_put_var1_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_7d_eightbyteint':
> netcdf.f90:(.text+0xab2): undefined reference to `nf_get_varm_int_'
> netcdf.f90:(.text+0x1063): undefined reference to `nf_get_vars_int_'
> netcdf.f90:(.text+0x117d): undefined reference to `nf_get_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_6d_eightbyteint':
> netcdf.f90:(.text+0x1aca): undefined reference to `nf_get_varm_int_'
> netcdf.f90:(.text+0x2023): undefined reference to `nf_get_vars_int_'
> netcdf.f90:(.text+0x211e): undefined reference to `nf_get_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_5d_eightbyteint':
> netcdf.f90:(.text+0x29d7): undefined reference to `nf_get_varm_int_'
> netcdf.f90:(.text+0x2e6a): undefined reference to `nf_get_vars_int_'
> netcdf.f90:(.text+0x2f36): undefined reference to `nf_get_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_4d_eightbyteint':
> netcdf.f90:(.text+0x370f): undefined reference to `nf_get_varm_int_'
> netcdf.f90:(.text+0x3ba0): undefined reference to `nf_get_vars_int_'
> netcdf.f90:(.text+0x3c09): undefined reference to `nf_get_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_3d_eightbyteint':
> netcdf.f90:(.text+0x436f): undefined reference to `nf_get_varm_int_'
> netcdf.f90:(.text+0x46fe): undefined reference to `nf_get_vars_int_'
> netcdf.f90:(.text+0x47e7): undefined reference to `nf_get_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_2d_eightbyteint':
> netcdf.f90:(.text+0x4e07): undefined reference to `nf_get_varm_int_'
> netcdf.f90:(.text+0x5187): undefined reference to `nf_get_vars_int_'
> netcdf.f90:(.text+0x51b5): undefined reference to `nf_get_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_1d_eightbyteint':
> netcdf.f90:(.text+0x56ff): undefined reference to `nf_get_varm_int_'
> netcdf.f90:(.text+0x59d1): undefined reference to `nf_get_vars_int_'
> netcdf.f90:(.text+0x5a1f): undefined reference to `nf_get_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_7d_eightbyteint':
> netcdf.f90:(.text+0x657d): undefined reference to `nf_put_varm_int_'
> netcdf.f90:(.text+0x6a82): undefined reference to `nf_put_vars_int_'
> netcdf.f90:(.text+0x6d1a): undefined reference to `nf_put_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_6d_eightbyteint':
> netcdf.f90:(.text+0x7c05): undefined reference to `nf_put_varm_int_'
> netcdf.f90:(.text+0x8075): undefined reference to `nf_put_vars_int_'
> netcdf.f90:(.text+0x8420): undefined reference to `nf_put_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_5d_eightbyteint':
> netcdf.f90:(.text+0x9012): undefined reference to `nf_put_varm_int_'
> netcdf.f90:(.text+0x93b5): undefined reference to `nf_put_vars_int_'
> netcdf.f90:(.text+0x96cf): undefined reference to `nf_put_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_4d_eightbyteint':
> netcdf.f90:(.text+0xa117): undefined reference to `nf_put_varm_int_'
> netcdf.f90:(.text+0xa51a): undefined reference to `nf_put_vars_int_'
> netcdf.f90:(.text+0xa784): undefined reference to `nf_put_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_3d_eightbyteint':
> netcdf.f90:(.text+0xaff6): undefined reference to `nf_put_varm_int_'
> netcdf.f90:(.text+0xb2b2): undefined reference to `nf_put_vars_int_'
> netcdf.f90:(.text+0xb4fb): undefined reference to `nf_put_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_2d_eightbyteint':
> netcdf.f90:(.text+0xbc0e): undefined reference to `nf_put_varm_int_'
> netcdf.f90:(.text+0xbe82): undefined reference to `nf_put_vars_int_'
> netcdf.f90:(.text+0xc033): undefined reference to `nf_put_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_1d_eightbyteint':
> netcdf.f90:(.text+0xc5d7): undefined reference to `nf_put_varm_int_'
> netcdf.f90:(.text+0xc7b3): undefined reference to `nf_put_vars_int_'
> netcdf.f90:(.text+0xc8c7): undefined reference to `nf_put_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_7d_eightbytereal':
> netcdf.f90:(.text+0xd1b2): undefined reference to `nf_get_varm_double_'
> netcdf.f90:(.text+0xd412): undefined reference to `nf_get_vars_double_'
> netcdf.f90:(.text+0xd5c0): undefined reference to `nf_get_vara_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_6d_eightbytereal':
> netcdf.f90:(.text+0xde1c): undefined reference to `nf_get_varm_double_'
> netcdf.f90:(.text+0xe04d): undefined reference to `nf_get_vars_double_'
> netcdf.f90:(.text+0xe1bd): undefined reference to `nf_get_vara_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_5d_eightbytereal':
> netcdf.f90:(.text+0xe9a4): undefined reference to `nf_get_varm_double_'
> netcdf.f90:(.text+0xebb1): undefined reference to `nf_get_vars_double_'
> netcdf.f90:(.text+0xecfb): undefined reference to `nf_get_vara_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_4d_eightbytereal':
> netcdf.f90:(.text+0xf400): undefined reference to `nf_get_varm_double_'
> netcdf.f90:(.text+0xf5f9): undefined reference to `nf_get_vars_double_'
> netcdf.f90:(.text+0xf730): undefined reference to `nf_get_vara_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_3d_eightbytereal':
> netcdf.f90:(.text+0xfdab): undefined reference to `nf_get_varm_double_'
> netcdf.f90:(.text+0xff60): undefined reference to `nf_get_vars_double_'
> netcdf.f90:(.text+0x1005b): undefined reference to `nf_get_vara_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_2d_eightbytereal':
> netcdf.f90:(.text+0x1062a): undefined reference to `nf_get_varm_double_'
> netcdf.f90:(.text+0x107b8): undefined reference to `nf_get_vars_double_'
> netcdf.f90:(.text+0x10892): undefined reference to `nf_get_vara_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_1d_eightbytereal':
> netcdf.f90:(.text+0x10df4): undefined reference to `nf_get_varm_double_'
> netcdf.f90:(.text+0x10f5b): undefined reference to `nf_get_vars_double_'
> netcdf.f90:(.text+0x1100c): undefined reference to `nf_get_vara_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_7d_fourbytereal':
> netcdf.f90:(.text+0x118d2): undefined reference to `nf_get_varm_real_'
> netcdf.f90:(.text+0x11b32): undefined reference to `nf_get_vars_real_'
> netcdf.f90:(.text+0x11ce0): undefined reference to `nf_get_vara_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_6d_fourbytereal':
> netcdf.f90:(.text+0x1253c): undefined reference to `nf_get_varm_real_'
> netcdf.f90:(.text+0x1276d): undefined reference to `nf_get_vars_real_'
> netcdf.f90:(.text+0x128dd): undefined reference to `nf_get_vara_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_5d_fourbytereal':
> netcdf.f90:(.text+0x130c4): undefined reference to `nf_get_varm_real_'
> netcdf.f90:(.text+0x132d1): undefined reference to `nf_get_vars_real_'
> netcdf.f90:(.text+0x1341b): undefined reference to `nf_get_vara_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_4d_fourbytereal':
> netcdf.f90:(.text+0x13b20): undefined reference to `nf_get_varm_real_'
> netcdf.f90:(.text+0x13d19): undefined reference to `nf_get_vars_real_'
> netcdf.f90:(.text+0x13e50): undefined reference to `nf_get_vara_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_3d_fourbytereal':
> netcdf.f90:(.text+0x144cb): undefined reference to `nf_get_varm_real_'
> netcdf.f90:(.text+0x14680): undefined reference to `nf_get_vars_real_'
> netcdf.f90:(.text+0x1477b): undefined reference to `nf_get_vara_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_2d_fourbytereal':
> netcdf.f90:(.text+0x14d4a): undefined reference to `nf_get_varm_real_'
> netcdf.f90:(.text+0x14ed8): undefined reference to `nf_get_vars_real_'
> netcdf.f90:(.text+0x14fb2): undefined reference to `nf_get_vara_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_1d_fourbytereal':
> netcdf.f90:(.text+0x15514): undefined reference to `nf_get_varm_real_'
> netcdf.f90:(.text+0x1567b): undefined reference to `nf_get_vars_real_'
> netcdf.f90:(.text+0x1572c): undefined reference to `nf_get_vara_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_7d_fourbyteint':
> netcdf.f90:(.text+0x1601f): undefined reference to `nf_get_varm_int_'
> netcdf.f90:(.text+0x1650b): undefined reference to `nf_get_vars_int_'
> netcdf.f90:(.text+0x1655c): undefined reference to `nf_get_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_6d_fourbyteint':
> netcdf.f90:(.text+0x16e07): undefined reference to `nf_get_varm_int_'
> netcdf.f90:(.text+0x17267): undefined reference to `nf_get_vars_int_'
> netcdf.f90:(.text+0x172c2): undefined reference to `nf_get_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_5d_fourbyteint':
> netcdf.f90:(.text+0x17ae7): undefined reference to `nf_get_varm_int_'
> netcdf.f90:(.text+0x17ef6): undefined reference to `nf_get_vars_int_'
> netcdf.f90:(.text+0x17f48): undefined reference to `nf_get_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_4d_fourbyteint':
> netcdf.f90:(.text+0x18684): undefined reference to `nf_get_varm_int_'
> netcdf.f90:(.text+0x18a4e): undefined reference to `nf_get_vars_int_'
> netcdf.f90:(.text+0x18ab2): undefined reference to `nf_get_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_3d_fourbyteint':
> netcdf.f90:(.text+0x1917c): undefined reference to `nf_get_varm_int_'
> netcdf.f90:(.text+0x194cf): undefined reference to `nf_get_vars_int_'
> netcdf.f90:(.text+0x19520): undefined reference to `nf_get_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_2d_fourbyteint':
> netcdf.f90:(.text+0x19b2f): undefined reference to `nf_get_varm_int_'
> netcdf.f90:(.text+0x19e31): undefined reference to `nf_get_vars_int_'
> netcdf.f90:(.text+0x19e82): undefined reference to `nf_get_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_1d_fourbyteint':
> netcdf.f90:(.text+0x1a3cf): undefined reference to `nf_get_varm_int_'
> netcdf.f90:(.text+0x1a679): undefined reference to `nf_get_vars_int_'
> netcdf.f90:(.text+0x1a6c7): undefined reference to `nf_get_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_7d_twobyteint':
> netcdf.f90:(.text+0x1af82): undefined reference to `nf_get_varm_int2_'
> netcdf.f90:(.text+0x1b1e2): undefined reference to `nf_get_vars_int2_'
> netcdf.f90:(.text+0x1b390): undefined reference to `nf_get_vara_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_6d_twobyteint':
> netcdf.f90:(.text+0x1bbec): undefined reference to `nf_get_varm_int2_'
> netcdf.f90:(.text+0x1be1d): undefined reference to `nf_get_vars_int2_'
> netcdf.f90:(.text+0x1bf8d): undefined reference to `nf_get_vara_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_5d_twobyteint':
> netcdf.f90:(.text+0x1c774): undefined reference to `nf_get_varm_int2_'
> netcdf.f90:(.text+0x1c981): undefined reference to `nf_get_vars_int2_'
> netcdf.f90:(.text+0x1cacb): undefined reference to `nf_get_vara_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_4d_twobyteint':
> netcdf.f90:(.text+0x1d1d0): undefined reference to `nf_get_varm_int2_'
> netcdf.f90:(.text+0x1d3c9): undefined reference to `nf_get_vars_int2_'
> netcdf.f90:(.text+0x1d500): undefined reference to `nf_get_vara_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_3d_twobyteint':
> netcdf.f90:(.text+0x1db7b): undefined reference to `nf_get_varm_int2_'
> netcdf.f90:(.text+0x1dd30): undefined reference to `nf_get_vars_int2_'
> netcdf.f90:(.text+0x1de2b): undefined reference to `nf_get_vara_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_2d_twobyteint':
> netcdf.f90:(.text+0x1e3fa): undefined reference to `nf_get_varm_int2_'
> netcdf.f90:(.text+0x1e588): undefined reference to `nf_get_vars_int2_'
> netcdf.f90:(.text+0x1e662): undefined reference to `nf_get_vara_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_1d_twobyteint':
> netcdf.f90:(.text+0x1ebc4): undefined reference to `nf_get_varm_int2_'
> netcdf.f90:(.text+0x1ed2b): undefined reference to `nf_get_vars_int2_'
> netcdf.f90:(.text+0x1eddc): undefined reference to `nf_get_vara_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_7d_onebyteint':
> netcdf.f90:(.text+0x1f6a2): undefined reference to `nf_get_varm_int1_'
> netcdf.f90:(.text+0x1f902): undefined reference to `nf_get_vars_int1_'
> netcdf.f90:(.text+0x1fab0): undefined reference to `nf_get_vara_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_6d_onebyteint':
> netcdf.f90:(.text+0x2030c): undefined reference to `nf_get_varm_int1_'
> netcdf.f90:(.text+0x2053d): undefined reference to `nf_get_vars_int1_'
> netcdf.f90:(.text+0x206ad): undefined reference to `nf_get_vara_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_5d_onebyteint':
> netcdf.f90:(.text+0x20e94): undefined reference to `nf_get_varm_int1_'
> netcdf.f90:(.text+0x210a1): undefined reference to `nf_get_vars_int1_'
> netcdf.f90:(.text+0x211eb): undefined reference to `nf_get_vara_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_4d_onebyteint':
> netcdf.f90:(.text+0x218f0): undefined reference to `nf_get_varm_int1_'
> netcdf.f90:(.text+0x21ae9): undefined reference to `nf_get_vars_int1_'
> netcdf.f90:(.text+0x21c20): undefined reference to `nf_get_vara_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_3d_onebyteint':
> netcdf.f90:(.text+0x2229b): undefined reference to `nf_get_varm_int1_'
> netcdf.f90:(.text+0x22450): undefined reference to `nf_get_vars_int1_'
> netcdf.f90:(.text+0x2254b): undefined reference to `nf_get_vara_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_2d_onebyteint':
> netcdf.f90:(.text+0x22b1a): undefined reference to `nf_get_varm_int1_'
> netcdf.f90:(.text+0x22ca8): undefined reference to `nf_get_vars_int1_'
> netcdf.f90:(.text+0x22d82): undefined reference to `nf_get_vara_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_1d_onebyteint':
> netcdf.f90:(.text+0x232e4): undefined reference to `nf_get_varm_int1_'
> netcdf.f90:(.text+0x2344b): undefined reference to `nf_get_vars_int1_'
> netcdf.f90:(.text+0x234fc): undefined reference to `nf_get_vara_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_7d_eightbytereal':
> netcdf.f90:(.text+0x23dc2): undefined reference to `nf_put_varm_double_'
> netcdf.f90:(.text+0x24022): undefined reference to `nf_put_vars_double_'
> netcdf.f90:(.text+0x241d0): undefined reference to `nf_put_vara_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_6d_eightbytereal':
> netcdf.f90:(.text+0x24a2c): undefined reference to `nf_put_varm_double_'
> netcdf.f90:(.text+0x24c5d): undefined reference to `nf_put_vars_double_'
> netcdf.f90:(.text+0x24dcd): undefined reference to `nf_put_vara_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_5d_eightbytereal':
> netcdf.f90:(.text+0x255b4): undefined reference to `nf_put_varm_double_'
> netcdf.f90:(.text+0x257c1): undefined reference to `nf_put_vars_double_'
> netcdf.f90:(.text+0x2590b): undefined reference to `nf_put_vara_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_4d_eightbytereal':
> netcdf.f90:(.text+0x26010): undefined reference to `nf_put_varm_double_'
> netcdf.f90:(.text+0x26209): undefined reference to `nf_put_vars_double_'
> netcdf.f90:(.text+0x26340): undefined reference to `nf_put_vara_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_3d_eightbytereal':
> netcdf.f90:(.text+0x269bb): undefined reference to `nf_put_varm_double_'
> netcdf.f90:(.text+0x26b70): undefined reference to `nf_put_vars_double_'
> netcdf.f90:(.text+0x26c6b): undefined reference to `nf_put_vara_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_2d_eightbytereal':
> netcdf.f90:(.text+0x2723a): undefined reference to `nf_put_varm_double_'
> netcdf.f90:(.text+0x273c8): undefined reference to `nf_put_vars_double_'
> netcdf.f90:(.text+0x274a2): undefined reference to `nf_put_vara_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_1d_eightbytereal':
> netcdf.f90:(.text+0x27a04): undefined reference to `nf_put_varm_double_'
> netcdf.f90:(.text+0x27b6b): undefined reference to `nf_put_vars_double_'
> netcdf.f90:(.text+0x27c1c): undefined reference to `nf_put_vara_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_7d_fourbytereal':
> netcdf.f90:(.text+0x284e2): undefined reference to `nf_put_varm_real_'
> netcdf.f90:(.text+0x28742): undefined reference to `nf_put_vars_real_'
> netcdf.f90:(.text+0x288f0): undefined reference to `nf_put_vara_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_6d_fourbytereal':
> netcdf.f90:(.text+0x2914c): undefined reference to `nf_put_varm_real_'
> netcdf.f90:(.text+0x2937d): undefined reference to `nf_put_vars_real_'
> netcdf.f90:(.text+0x294ed): undefined reference to `nf_put_vara_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_5d_fourbytereal':
> netcdf.f90:(.text+0x29cd4): undefined reference to `nf_put_varm_real_'
> netcdf.f90:(.text+0x29ee1): undefined reference to `nf_put_vars_real_'
> netcdf.f90:(.text+0x2a02b): undefined reference to `nf_put_vara_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_4d_fourbytereal':
> netcdf.f90:(.text+0x2a730): undefined reference to `nf_put_varm_real_'
> netcdf.f90:(.text+0x2a929): undefined reference to `nf_put_vars_real_'
> netcdf.f90:(.text+0x2aa60): undefined reference to `nf_put_vara_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_3d_fourbytereal':
> netcdf.f90:(.text+0x2b0db): undefined reference to `nf_put_varm_real_'
> netcdf.f90:(.text+0x2b290): undefined reference to `nf_put_vars_real_'
> netcdf.f90:(.text+0x2b38b): undefined reference to `nf_put_vara_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_2d_fourbytereal':
> netcdf.f90:(.text+0x2b95a): undefined reference to `nf_put_varm_real_'
> netcdf.f90:(.text+0x2bae8): undefined reference to `nf_put_vars_real_'
> netcdf.f90:(.text+0x2bbc2): undefined reference to `nf_put_vara_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_1d_fourbytereal':
> netcdf.f90:(.text+0x2c124): undefined reference to `nf_put_varm_real_'
> netcdf.f90:(.text+0x2c28b): undefined reference to `nf_put_vars_real_'
> netcdf.f90:(.text+0x2c33c): undefined reference to `nf_put_vara_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_7d_fourbyteint':
> netcdf.f90:(.text+0x2ce9d): undefined reference to `nf_put_varm_int_'
> netcdf.f90:(.text+0x2d3a2): undefined reference to `nf_put_vars_int_'
> netcdf.f90:(.text+0x2d63e): undefined reference to `nf_put_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_6d_fourbyteint':
> netcdf.f90:(.text+0x2e515): undefined reference to `nf_put_varm_int_'
> netcdf.f90:(.text+0x2e985): undefined reference to `nf_put_vars_int_'
> netcdf.f90:(.text+0x2ed30): undefined reference to `nf_put_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_5d_fourbyteint':
> netcdf.f90:(.text+0x2f922): undefined reference to `nf_put_varm_int_'
> netcdf.f90:(.text+0x2fcc5): undefined reference to `nf_put_vars_int_'
> netcdf.f90:(.text+0x2ffdf): undefined reference to `nf_put_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_4d_fourbyteint':
> netcdf.f90:(.text+0x30a27): undefined reference to `nf_put_varm_int_'
> netcdf.f90:(.text+0x30e2a): undefined reference to `nf_put_vars_int_'
> netcdf.f90:(.text+0x31094): undefined reference to `nf_put_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_3d_fourbyteint':
> netcdf.f90:(.text+0x31906): undefined reference to `nf_put_varm_int_'
> netcdf.f90:(.text+0x31bc2): undefined reference to `nf_put_vars_int_'
> netcdf.f90:(.text+0x31e0b): undefined reference to `nf_put_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_2d_fourbyteint':
> netcdf.f90:(.text+0x3253e): undefined reference to `nf_put_varm_int_'
> netcdf.f90:(.text+0x327ac): undefined reference to `nf_put_vars_int_'
> netcdf.f90:(.text+0x328b8): undefined reference to `nf_put_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_1d_fourbyteint':
> netcdf.f90:(.text+0x32e76): undefined reference to `nf_put_varm_int_'
> netcdf.f90:(.text+0x3304a): undefined reference to `nf_put_vars_int_'
> netcdf.f90:(.text+0x3315d): undefined reference to `nf_put_vara_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_7d_twobyteint':
> netcdf.f90:(.text+0x33a52): undefined reference to `nf_put_varm_int2_'
> netcdf.f90:(.text+0x33cb2): undefined reference to `nf_put_vars_int2_'
> netcdf.f90:(.text+0x33e60): undefined reference to `nf_put_vara_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_6d_twobyteint':
> netcdf.f90:(.text+0x346bc): undefined reference to `nf_put_varm_int2_'
> netcdf.f90:(.text+0x348ed): undefined reference to `nf_put_vars_int2_'
> netcdf.f90:(.text+0x34a5d): undefined reference to `nf_put_vara_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_5d_twobyteint':
> netcdf.f90:(.text+0x35244): undefined reference to `nf_put_varm_int2_'
> netcdf.f90:(.text+0x35451): undefined reference to `nf_put_vars_int2_'
> netcdf.f90:(.text+0x3559b): undefined reference to `nf_put_vara_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_4d_twobyteint':
> netcdf.f90:(.text+0x35ca0): undefined reference to `nf_put_varm_int2_'
> netcdf.f90:(.text+0x35e99): undefined reference to `nf_put_vars_int2_'
> netcdf.f90:(.text+0x35fd0): undefined reference to `nf_put_vara_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_3d_twobyteint':
> netcdf.f90:(.text+0x3664b): undefined reference to `nf_put_varm_int2_'
> netcdf.f90:(.text+0x36800): undefined reference to `nf_put_vars_int2_'
> netcdf.f90:(.text+0x368fb): undefined reference to `nf_put_vara_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_2d_twobyteint':
> netcdf.f90:(.text+0x36eca): undefined reference to `nf_put_varm_int2_'
> netcdf.f90:(.text+0x37058): undefined reference to `nf_put_vars_int2_'
> netcdf.f90:(.text+0x37132): undefined reference to `nf_put_vara_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_1d_twobyteint':
> netcdf.f90:(.text+0x37694): undefined reference to `nf_put_varm_int2_'
> netcdf.f90:(.text+0x377fb): undefined reference to `nf_put_vars_int2_'
> netcdf.f90:(.text+0x378ac): undefined reference to `nf_put_vara_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_7d_onebyteint':
> netcdf.f90:(.text+0x38172): undefined reference to `nf_put_varm_int1_'
> netcdf.f90:(.text+0x383d2): undefined reference to `nf_put_vars_int1_'
> netcdf.f90:(.text+0x38580): undefined reference to `nf_put_vara_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_6d_onebyteint':
> netcdf.f90:(.text+0x38ddc): undefined reference to `nf_put_varm_int1_'
> netcdf.f90:(.text+0x3900d): undefined reference to `nf_put_vars_int1_'
> netcdf.f90:(.text+0x3917d): undefined reference to `nf_put_vara_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_5d_onebyteint':
> netcdf.f90:(.text+0x39964): undefined reference to `nf_put_varm_int1_'
> netcdf.f90:(.text+0x39b71): undefined reference to `nf_put_vars_int1_'
> netcdf.f90:(.text+0x39cbb): undefined reference to `nf_put_vara_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_4d_onebyteint':
> netcdf.f90:(.text+0x3a3c0): undefined reference to `nf_put_varm_int1_'
> netcdf.f90:(.text+0x3a5b9): undefined reference to `nf_put_vars_int1_'
> netcdf.f90:(.text+0x3a6f0): undefined reference to `nf_put_vara_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_3d_onebyteint':
> netcdf.f90:(.text+0x3ad6b): undefined reference to `nf_put_varm_int1_'
> netcdf.f90:(.text+0x3af20): undefined reference to `nf_put_vars_int1_'
> netcdf.f90:(.text+0x3b01b): undefined reference to `nf_put_vara_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_2d_onebyteint':
> netcdf.f90:(.text+0x3b5ea): undefined reference to `nf_put_varm_int1_'
> netcdf.f90:(.text+0x3b778): undefined reference to `nf_put_vars_int1_'
> netcdf.f90:(.text+0x3b852): undefined reference to `nf_put_vara_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_1d_onebyteint':
> netcdf.f90:(.text+0x3bdb4): undefined reference to `nf_put_varm_int1_'
> netcdf.f90:(.text+0x3bf1b): undefined reference to `nf_put_vars_int1_'
> netcdf.f90:(.text+0x3bfcc): undefined reference to `nf_put_vara_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_eightbytereal':
> netcdf.f90:(.text+0x3c0b3): undefined reference to `nf_get_var1_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_fourbytereal':
> netcdf.f90:(.text+0x3c193): undefined reference to `nf_get_var1_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_fourbyteint':
> netcdf.f90:(.text+0x3c27f): undefined reference to `nf_get_var1_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_twobyteint':
> netcdf.f90:(.text+0x3c363): undefined reference to `nf_get_var1_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_onebyteint':
> netcdf.f90:(.text+0x3c443): undefined reference to `nf_get_var1_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_eightbytereal':
> netcdf.f90:(.text+0x3c523): undefined reference to `nf_put_var1_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_fourbytereal':
> netcdf.f90:(.text+0x3c603): undefined reference to `nf_put_var1_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_fourbyteint':
> netcdf.f90:(.text+0x3c6f5): undefined reference to `nf_put_var1_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_twobyteint':
> netcdf.f90:(.text+0x3c7d3): undefined reference to `nf_put_var1_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_onebyteint':
> netcdf.f90:(.text+0x3c8b3): undefined reference to `nf_put_var1_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_7d_text':
> netcdf.f90:(.text+0x3d072): undefined reference to `nf_get_varm_text_'
> netcdf.f90:(.text+0x3d179): undefined reference to `nf_get_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_6d_text':
> netcdf.f90:(.text+0x3d875): undefined reference to `nf_get_varm_text_'
> netcdf.f90:(.text+0x3d98f): undefined reference to `nf_get_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_5d_text':
> netcdf.f90:(.text+0x3e00b): undefined reference to `nf_get_varm_text_'
> netcdf.f90:(.text+0x3e11d): undefined reference to `nf_get_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_4d_text':
> netcdf.f90:(.text+0x3e74f): undefined reference to `nf_get_varm_text_'
> netcdf.f90:(.text+0x3e848): undefined reference to `nf_get_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_3d_text':
> netcdf.f90:(.text+0x3edbf): undefined reference to `nf_get_varm_text_'
> netcdf.f90:(.text+0x3eeb6): undefined reference to `nf_get_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_2d_text':
> netcdf.f90:(.text+0x3f3aa): undefined reference to `nf_get_varm_text_'
> netcdf.f90:(.text+0x3f4a1): undefined reference to `nf_get_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_1d_text':
> netcdf.f90:(.text+0x3f95d): undefined reference to `nf_get_varm_text_'
> netcdf.f90:(.text+0x3fa50): undefined reference to `nf_get_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_7d_text':
> netcdf.f90:(.text+0x40202): undefined reference to `nf_put_varm_text_'
> netcdf.f90:(.text+0x40309): undefined reference to `nf_put_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_6d_text':
> netcdf.f90:(.text+0x40a05): undefined reference to `nf_put_varm_text_'
> netcdf.f90:(.text+0x40b1f): undefined reference to `nf_put_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_5d_text':
> netcdf.f90:(.text+0x4119b): undefined reference to `nf_put_varm_text_'
> netcdf.f90:(.text+0x412ad): undefined reference to `nf_put_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_4d_text':
> netcdf.f90:(.text+0x418df): undefined reference to `nf_put_varm_text_'
> netcdf.f90:(.text+0x419d8): undefined reference to `nf_put_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_3d_text':
> netcdf.f90:(.text+0x41f4f): undefined reference to `nf_put_varm_text_'
> netcdf.f90:(.text+0x42046): undefined reference to `nf_put_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_2d_text':
> netcdf.f90:(.text+0x4253a): undefined reference to `nf_put_varm_text_'
> netcdf.f90:(.text+0x42631): undefined reference to `nf_put_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_1d_text':
> netcdf.f90:(.text+0x42aed): undefined reference to `nf_put_varm_text_'
> netcdf.f90:(.text+0x42be0): undefined reference to `nf_put_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_var_text':
> netcdf.f90:(.text+0x42e71): undefined reference to `nf_get_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_var_text':
> netcdf.f90:(.text+0x43151): undefined reference to `nf_put_vars_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_inquire_variable':
> netcdf.f90:(.text+0x43256): undefined reference to `nf_inq_var_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_def_var_manydims':
> netcdf.f90:(.text+0x4350e): undefined reference to `nf_def_var_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_def_var_onedim':
> netcdf.f90:(.text+0x435a0): undefined reference to `nf_def_var_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_def_var_scalar':
> netcdf.f90:(.text+0x435ca): undefined reference to `nf_def_var_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_att_one_eightbytereal':
> netcdf.f90:(.text+0x435ee): undefined reference to `nf_get_att_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_att_eightbytereal':
> netcdf.f90:(.text+0x4369f): undefined reference to `nf_get_att_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_att_one_eightbytereal':
> netcdf.f90:(.text+0x43728): undefined reference to `nf_put_att_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_att_eightbytereal':
> netcdf.f90:(.text+0x437e7): undefined reference to `nf_put_att_double_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_att_one_fourbytereal':
> netcdf.f90:(.text+0x4385e): undefined reference to `nf_get_att_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_att_fourbytereal':
> netcdf.f90:(.text+0x4390f): undefined reference to `nf_get_att_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_att_one_fourbytereal':
> netcdf.f90:(.text+0x43998): undefined reference to `nf_put_att_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_att_fourbytereal':
> netcdf.f90:(.text+0x43a57): undefined reference to `nf_put_att_real_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_att_one_eightbyteint':
> netcdf.f90:(.text+0x43ace): undefined reference to `nf_get_att_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_att_eightbyteint':
> netcdf.f90:(.text+0x43b54): undefined reference to `nf_get_att_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_att_one_eightbyteint':
> netcdf.f90:(.text+0x43bd5): undefined reference to `nf_put_att_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_att_eightbyteint':
> netcdf.f90:(.text+0x43cc6): undefined reference to `nf_put_att_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_att_one_fourbyteint':
> netcdf.f90:(.text+0x43d3e): undefined reference to `nf_get_att_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_att_fourbyteint':
> netcdf.f90:(.text+0x43dc4): undefined reference to `nf_get_att_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_att_one_fourbyteint':
> netcdf.f90:(.text+0x43eb4): undefined reference to `nf_put_att_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_att_fourbyteint':
> netcdf.f90:(.text+0x43fe6): undefined reference to `nf_put_att_int_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_att_one_twobyteint':
> netcdf.f90:(.text+0x4405e): undefined reference to `nf_get_att_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_att_twobyteint':
> netcdf.f90:(.text+0x440ff): undefined reference to `nf_get_att_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_att_one_twobyteint':
> netcdf.f90:(.text+0x44186): undefined reference to `nf_put_att_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_att_twobyteint':
> netcdf.f90:(.text+0x44237): undefined reference to `nf_put_att_int2_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_att_one_onebyteint':
> netcdf.f90:(.text+0x442b0): undefined reference to `nf_get_att_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_att_onebyteint':
> netcdf.f90:(.text+0x4435f): undefined reference to `nf_get_att_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_att_one_onebyteint':
> netcdf.f90:(.text+0x443e1): undefined reference to `nf_put_att_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_att_onebyteint':
> netcdf.f90:(.text+0x44497): undefined reference to `nf_put_att_int1_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_put_att_text':
> netcdf.f90:(.text+0x445ee): undefined reference to `nf_put_att_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_inquire_attribute':
> netcdf.f90:(.text+0x44664): undefined reference to `nf_inq_attid_'
> netcdf.f90:(.text+0x4467f): undefined reference to `nf_inq_att_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_inquire_dimension':
> netcdf.f90:(.text+0x44735): undefined reference to `nf_inq_dim_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_create':
> netcdf.f90:(.text+0x448ff): undefined reference to `nf__create_'
> netcdf.f90:(.text+0x4491b): undefined reference to `nf_create_'
> netcdf.f90:(.text+0x44936): undefined reference to `nf__create_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_inquire':
> netcdf.f90:(.text+0x449be): undefined reference to `nf_inq_'
> netcdf.f90:(.text+0x44a01): undefined reference to `nf_inq_format_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_enddef':
> netcdf.f90:(.text+0x44ac7): undefined reference to `nf_enddef_'
> netcdf.f90:(.text+0x44b37): undefined reference to `nf__enddef_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_strerror':
> netcdf.f90:(.text+0x44bb1): undefined reference to `nf_strerror_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_inq_libvers':
> netcdf.f90:(.text+0x44c31): undefined reference to `nf_inq_libvers_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_rename_var':
> netcdf.f90:(.text+0x431c3): undefined reference to `nf_rename_var_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_inq_varid':
> netcdf.f90:(.text+0x43453): undefined reference to `nf_inq_varid_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_get_att_text':
> netcdf.f90:(.text+0x4457c): undefined reference to `nf_get_att_text_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_inq_attname':
> netcdf.f90:(.text+0x446c3): undefined reference to `nf_inq_attname_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_del_att':
> netcdf.f90:(.text+0x446d3): undefined reference to `nf_del_att_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_rename_att':
> netcdf.f90:(.text+0x446e3): undefined reference to `nf_rename_att_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_copy_att':
> netcdf.f90:(.text+0x446f3): undefined reference to `nf_copy_att_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_rename_dim':
> netcdf.f90:(.text+0x44893): undefined reference to `nf_rename_dim_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_inq_dimid':
> netcdf.f90:(.text+0x448a3): undefined reference to `nf_inq_dimid_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_def_dim':
> netcdf.f90:(.text+0x448b3): undefined reference to `nf_def_dim_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_open':
> netcdf.f90:(.text+0x44951): undefined reference to `nf__open_'
> netcdf.f90:(.text+0x4495e): undefined reference to `nf_open_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_delete':
> netcdf.f90:(.text+0x44a43): undefined reference to `nf_delete_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_close':
> netcdf.f90:(.text+0x44a53): undefined reference to `nf_close_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_abort':
> netcdf.f90:(.text+0x44a63): undefined reference to `nf_abort_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_sync':
> netcdf.f90:(.text+0x44a73): undefined reference to `nf_sync_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_redef':
> netcdf.f90:(.text+0x44b43): undefined reference to `nf_redef_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_set_fill':
> netcdf.f90:(.text+0x44b53): undefined reference to `nf_set_fill_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_open_mp':
> netcdf.f90:(.text+0x44b63): undefined reference to `nf__open_mp_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_create_mp':
> netcdf.f90:(.text+0x44b73): undefined reference to `nf__create_mp_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_set_base_pe':
> netcdf.f90:(.text+0x44b83): undefined reference to `nf_set_base_pe_'
> /home/bcossins/Science-software/amber14_gnu/lib/libnetcdff.a(netcdf.o): In function `__netcdf_MOD_nf90_inq_base_pe':
> netcdf.f90:(.text+0x44b93): undefined reference to `nf_inq_base_pe_'
> collect2: error: ld returned 1 exit status
>
> Error: NetCDF build failed.
> Configure failed due to the errors above!
>
> ------------------------------------
>
> Grateful for any pointers.
>
> Thanks
>
> Dr Benjamin P Cossins
> Senior Scientist - CADD
> UCB Celltech
> 208 Bath Road
> Slough
> SL1 3WE
>
> 44-(0)1753 807562
>
> [NewTagline]<http://www.ucb.com/>
>
> ________________________________
> UCB Celltech is the UK branch of UCB Pharma S.A., a company registered in Belgium with registered offices at Allée de la Recherche 60, 1070 Brussels, Belgium, KBO/BCE nr. 0403.096.168, RPR/RPM Brussels.
> UCB Celltech’s UK branch registration number is BR009137 and its UK representative office is at 208 Bath Road, Slough, Berkshire SL1 3WE.
>
> (Ref: #*CUK0308) [Ref-CUK0308]
> ________________________________
> Legal Notice: This electronic mail and its attachments are intended solely for the person(s) to whom they are addressed and contain information which is confidential or otherwise protected from disclosure, except for the purpose for which they are intended. Dissemination, distribution, or reproduction by anyone other than the intended recipients is prohibited and may be illegal. If you are not an intended recipient, please immediately inform the sender and return the electronic mail and its attachments and destroy any copies which may be in your possession. UCB screens electronic mails for viruses but does not warrant that this electronic mail is free of any viruses. UCB accepts no liability for any damage caused by any virus transmitted by this electronic mail. (Ref: #*UG1107) [Ref-UG1107]
> ________________________________
>
> _______________________________________________
> AMBER mailing list
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> http://lists.ambermd.org/mailman/listinfo/amber
>
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu May 15 2014 - 08:30:02 PDT
