HI All
I am using cpptraj 'nastruct' option with AT14. I have starting 15 base
pairs so during evolution of MD some base pairs breaks as expected. In
comparison to my initial pairs finally I get 13 basepairs as calculated by
nastruct.
I am wondering when nastruct does NOT print the basepair information? Is it
when H-bonds between base pairs goes zero then base pair info is not
printed (as manual says at least one H bond should be present) or some
other factor among the Shear, Stretch, Stagger, Buckle, Propeller, Opening.
If not then I would expect it should print H-bond being '0' or it simply
ignores printing them.
thanks
JIom
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Received on Thu May 15 2014 - 08:00:02 PDT
