Dear Amber's users!
I need to refine some flexible regions (mainly long loop and linker
regions) of my proteins prior to the production MD run using some enhanced
sampling engines implemented in Amber like accelerated molecular dynamics
or simulated annealing. Please provide me with some basic ideas of the
easiliest realization of these methods in amber including suitable implicit
solvent models for such task with the tutorials and further reading.
TFH,
James
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Received on Mon May 26 2014 - 03:30:02 PDT
