[AMBER] parmchk2 segfaults

From: Hannes Loeffler <Hannes.Loeffler.stfc.ac.uk>
Date: Fri, 16 May 2014 14:50:54 +0100

Hi,

parmchk2 crashes on the attached mol2 input file (with dummy atoms) but
apparently only under Ubuntu 12.04 x86_64 (tested on a desktop and a
laptop machine). Non-dummy systems seem to be all fine.

No problem on other systems (both 32 and 64bit) I have access to.
Parmchk is fine on all platforms.

The command line:
parmchk2 -i test.mol2 -f mol2 -o test.frcmod


Cheers,
Hannes.
-- 
Scanned by iCritical.


Content-Transfer-Encoding: base64
Content-Disposition: attachment; filename=test.mol2
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_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri May 16 2014 - 07:00:05 PDT
Custom Search