Assuming you have the open and closed states, see
http://ambermd.org/tutorials/advanced/tutorial5_amber11/
James
On Wed, May 21, 2014 at 8:40 AM, Hector A. Baldoni <hbaldoni.unsl.edu.ar>wrote:
> Dear Amber users,
>
> My goal is obtain the low energy conversion path between to states
> (open/close) of a protein. Could I use TMD to do it? Which method included
> in amber would allow me to propose a low energy conversion path between
> states?
> I would highly appreciate any advice or reference.
>
> Greeting,
> Hector.
>
>
> --------------------------------------
> Dr. Hector A. Baldoni
> Area de Quimica General e Inorganica
> Universidad Nacional de San Luis
> Chacabuco 917 (D5700BWS)
> San Luis - Argentina
> hbaldoni at unsl dot edu dot ar
> Tel.:+54-(0)266-4520300 ext. 6157
> --------------------------------------
>
>
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Received on Wed May 21 2014 - 07:30:03 PDT
