Re: [AMBER] 3NKB5

From: Jason Swails <jason.swails.gmail.com>
Date: Wed, 28 May 2014 10:29:13 -0400

On Wed, May 28, 2014 at 10:19 AM, 王珍 <wangzhenzk.126.com> wrote:

> Hi Jason,
> After i pronate the N3, why can not i save the parameter of the force
> field using the saveamberparm?
>

​Presumably because you did not load the protonated nucleic acid
parameters. Something like

loadAmberParams frcmod.protonated_nucleic

For future reference, asking vague questions devoid of details is unlikely
to yield a helpful answer. 99% of the times I would ask "what is the exact
error message, what input did you use, etc."

-- 
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Wed May 28 2014 - 08:00:02 PDT
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