[AMBER] FapydG parameters

From: Norbert GARNIER <norbert.garnier.cnrs-orleans.fr>
Date: Wed, 07 May 2014 14:30:27 +0200

Dear AMBER users,

Using AMBER 11, I would like to perform MD simulations on a Fpg/DNA
complex including a FapydG nucleotide (PDB 1XC8).
Could you give me some advice on procedures for determining atomic
partial charges as well as the corresponding force field parameters
(xx.frcmod)?
Thank you very much for your help.
Best regards,

Norbert

-- 
Dr. Norbert GARNIER
Maître de Conférences
Université d'Orléans, Orléans France
« DNA repair: structural and functional approaches»
Centre de Biophysique Moléculaire, UPR4301, CNRS
rue Charles Sadron
45 071 Orléans cedex 02
Tel: +33 (0)2 38 25 76 68
Web site : http://cbm.cnrs-orleans.fr/
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Received on Wed May 07 2014 - 06:00:05 PDT