Re: [AMBER] Temperature rises to 4000K during NVT equilibration

From: Jason Swails <jason.swails.gmail.com>
Date: Wed, 21 May 2014 11:40:51 -0400

On Wed, 2014-05-21 at 20:26 +0530, Indrajit Deb wrote:
> 1. *Were all patches applied *
>
> The output of ./configure is as follows:
>
> -------------------------------------------------------------------------------------------------------------
> Checking for updates...
> Checking for available patches online. This may take a few seconds...
>
> Available AmberTools 13 patches:
>
> update.1, update.2, update.3, update.4, update.5, update.6, update.7,
> update.8, update.9, update.10,
> update.11, update.12, update.13, update.14, update.15, update.16,
> update.17, update.18, update.19, update.20,
> update.21, update.22, update.23, update.24
>
> Available Amber 12 patches:
>
> bugfix.1, bugfix.2, bugfix.3, bugfix.4, bugfix.5, bugfix.6, bugfix.7,
> bugfix.8, bugfix.9.bz2_, bugfix.10,
> bugfix.11, bugfix.12, bugfix.13, bugfix.14, bugfix.15, bugfix.16,
> bugfix.17, bugfix.18.bz2, bugfix.19, bugfix.20,
> bugfix.21
> There are patches available. Do you want to apply them now? [y/n]
> (Recommended Y)

No updates appear to be applied. Please recompile Amber (in both serial
and parallel) saying "yes" to the available patches to make sure you are
using a fully up-to-date version of Amber.

-- 
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Wed May 21 2014 - 09:00:03 PDT
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