Hi Jason,
I tried to follow carefully the instruction in the wikidot link you sent me, macport and xcode and Xquartz and most packages needed were installed correctly but there are still errors....
But there is something that appears again and again regarding llvm-3.1, which apparently is not compatible with mavericks.... and therefore I cannot install for example gcc47:
>sudo port install gcc47
---> Computing dependencies for llvm-3.1
---> Fetching distfiles for llvm-3.1
Error: llvm-3.1 is not supported on Mavericks or later.
Error: org.macports.fetch for port llvm-3.1 returned: unsupported platform
Please see the log file for port llvm-3.1 for details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_llvm-3.1/llvm-3.1/main.log
Error: Unable to upgrade port: 1
Error: Unable to execute port: upgrade libgcc failed
And the same error for mpich-gcc47
sudo port install mpich-gcc47
---> Computing dependencies for llvm-3.1
---> Fetching distfiles for llvm-3.1
Error: llvm-3.1 is not supported on Mavericks or later.
Error: org.macports.fetch for port llvm-3.1 returned: unsupported platform
Please see the log file for port llvm-3.1 for details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_llvm-3.1/llvm-3.1/main.log
Error: Unable to upgrade port: 1
Error: Unable to execute port: upgrade gcc47 failed
Do you know what can solve these problem??
I googled and found that version llvm-3.3 is supported
See
http://docs.gz.ro/macports-llvm33.html
But....I get many errors as well......
Thanks a lot,
I also paste the log file mentioned above.....
fabian.fabians-imac { ..amber14 }-> more /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_llvm-3.1/llvm-3.1/main.log
version:1
:msg:main ---> Computing dependencies for llvm-3.1:info:main .:debug:main llvm-3.1 has no conflicts
:debug:main Searching for dependency: libffi
:debug:main Found Dependency: receipt exists for libffi
:debug:main Searching for dependency: perl5
:debug:main Found Dependency: receipt exists for perl5
:debug:main Searching for dependency: llvm_select
:debug:main Found Dependency: receipt exists for llvm_select
:msg:main
:debug:main Executing org.macports.main (llvm-3.1)
:debug:main changing euid/egid - current euid: 0 - current egid: 0
:debug:main egid changed to: 501
:debug:main euid changed to: 502
:debug:main Skipping completed org.macports.archivefetch (llvm-3.1)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:fetch fetch phase started at Thu May 15 08:25:33 IDT 2014
:notice:fetch ---> Fetching distfiles for llvm-3.1
:debug:fetch Executing proc-pre-org.macports.fetch-fetch-0
:error:fetch llvm-3.1 is not supported on Mavericks or later.
:error:fetch org.macports.fetch for port llvm-3.1 returned: unsupported platform
:debug:fetch Error code: NONE
:debug:fetch Backtrace: unsupported platform
while executing
"$pre $targetname"
:info:fetch Warning: targets not executed for llvm-3.1: org.macports.install org.macports.fetch org.macports.checksum org.macports.extract org.macports.patch org.macports.configure org.macports.build org.macports.destroot
:notice:fetch Please see the log file for port llvm-3.1 for details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_lang_llvm-3.1/llvm-3.1/main.log
Thanks a lot,
Fabian
On May 14, 2014, at 5:34 PM, Jason Swails <jason.swails.gmail.com> wrote:
> On Wed, 2014-05-14 at 16:44 +0300, Fabian Glaser wrote:
>> fabian.fabians-imac { ..amber14 }-> gcc -v
>> Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
>> Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
>> Target: x86_64-apple-darwin13.1.0
>> Thread model: posix
>
> This compiler won't work with Amber. Follow my later suggestion:
>
> Your compilers appear broken. Please follow the instructions here to
> get your compilers set up properly: http://jswails.wikidot.com/mac-os-x
>
> I think the instructions for Mac OS X 10.9 should be compatible with
> 10.8.
>
> Good luck,
> Jason
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
_______________________________
Fabian Glaser, PhD
Head of the Structural Bioinformatics section
Bioinformatics Knowledge Unit - BKU
The Lorry I. Lokey Interdisciplinary
Center for Life Sciences and Engineering
Technion - Israel Institute of Technology
Haifa 32000, ISRAEL
fglaser.technion.ac.il
Tel: +972 4 8293701
Fax: +972 4 8225153
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed May 14 2014 - 23:00:02 PDT
