Re: [AMBER] Problems with the Amber-14 compilation with CUDA-5.5

From: Daniel Roe <daniel.r.roe.gmail.com>
Date: Thu, 1 May 2014 08:15:39 -0600

Hi,

Did you purchase an Amber 14 license, or did you just download
AmberTools 14? If you only downloaded AmberTools 14 you will not have
PMEMD (CPU or GPU code).

-Dan

On Thu, May 1, 2014 at 8:06 AM, James Starlight <jmsstarlight.gmail.com> wrote:
> David,
>
>
> my $AMBERHOME/src/ consist of only link to config.h
>
> If I use
> ./configure gnu
> make install
> (or just run install.sh)
> I install Amber without any problems (but makefile in ../src is still
> absent)
>
> if I add -cuda flag to configure I've obtained above error.
> It looks like some bug rather my inability to do simplest tasks. In any
> case please provide me with step-by-step how I could compile gnu-based
> amber because I've followed each step of manual.
>
>
>
>
>
> 2014-05-01 17:54 GMT+04:00 David A Case <case.biomaps.rutgers.edu>:
>
>> On Thu, May 01, 2014, James Starlight wrote:
>> >
>> > Could you explain it in more details?
>> >
>> > Previously I've installed amber without cuda from the amber14 source dir
>> > ./configure gnu
>> > make install
>>
>> This won't install Amber14 if you don't have Amber14.
>>
>> > > > /home/own/amber14/src/Makefile not found,
>>
>> You need to use a terminal, or the Finder (or file explorer or
>> something...),
>> naviate to the /home/own/amber14/src directory, and see if you have a file
>> called "Makefile".
>>
>> Details depend on the operating system you are using. If you are not used
>> to
>> doing things like this, see if you can find a friend with more computer
>> experience to help out. You are going to need to be able to explore
>> problems
>> like this one to make effective use of Amber.
>>
>> ...dac
>>
>>
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-- 
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Thu May 01 2014 - 07:30:03 PDT
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