Dear Ahmet, please take a time and read carefully acpype.googlecode.com. It
certainly would save you a lot of time.
Alan
On 5 May 2014 09:08, Ahmet yıldırım <ahmedo047.gmail.com> wrote:
> Dear users,
>
> I installed Amber12 and AmberTools13. But the acpype doesnt work. What is
> the problem?
> acpype -h
> acpype: command not found
>
> The other tools work:
> parmchk -h
> Usage: parmchk -i input file name
> -o frcmod file name
> -f input file format (prepi, prepc, ac, mol2)
> -p ff parm file
> -pf parm file format
> 1 amber FF data file, the default
> 2 additional force field parameter file (frcmod file)
> -c atom type correspondening file, default is ATCOR.DAT
> -a print out all force field parameters including those in
> the parmfile
> can be 'Y' (yes) or 'N' (no) default is 'N'
> -w print out parameters that matching improper dihedral
> parameters
> that contain 'X' in the force field parameter file, can
> be 'Y' (yes)
> or 'N' (no), default is 'Y'
>
>
> --
> Ahmet Yıldırım
> _______________________________________________
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Alan Wilter SOUSA da SILVA, DSc
Bioinformatician, UniProt
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom
Tel: +44 (0)1223 494588
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Received on Mon May 05 2014 - 08:30:05 PDT
