Thank you Jason.
I have gcc, g++ and gfortran (all are version 4.8.2 ) set up by Homebrew and created a path already.
Should I switch to MacPorts or use the version 4.7 ?
Ryuta
________________________________________
$B:9=P?M(B: Jason Swails <jason.swails.gmail.com>
$BAw?.F|;~(B: 2014$BG/(B5$B7n(B14$BF|(B 20:45
$B08.h(B: amber.ambermd.org
$B7oL>(B: Re: [AMBER] Installation Problem of AmberTools14
On Wed, 2014-05-14 at 04:54 +0000, ujihara.ryuuta.47u.st.kyoto-u.ac.jp
wrote:
> Dear Amber users,
>
> I am having a problem with installing AmberTools14 to Macbook Pro (mid 2010).
>
> Apparently there are some mistakes in compiler settings and configure flags, but I do not know how to sort the things out.
> Following is an error message I got when I run a configure command.
>
> Any help will be greatly appreciated.
>
>
> ./configure -macAccelerate gnu
> Checking for updates...
> Checking for available patches online. This may take a few seconds...
> Available AmberTools 14 patches:
> No patches available
> Searching for python2... Found python2.7: //anaconda/bin/python2.7
> Obtaining the gnu suite version:
> gcc -v
> The version is 4.8.2
> Testing the gcc compiler:
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c
> OK
> Testing the g++ compiler:
> g++ -o testp testp.cpp
> OK
> Testing the gfortran compiler:
> gfortran -O0 -o testp testp.f
> OK
> Testing mixed C/Fortran compilation:
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o testp.c.o testp.c
> gfortran -O0 -c -o testp.f.o testp.f
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c.o testp.f.o -lgfortran -w -framework Accelerate
> ld: library not found for -lgfortran
libgfortran.dylib is a standard library in the GCC package. The fact
that it cannot be found means that your GCC installation is broken or
your environment is wrong.
I'm not sure what you did to install the compilers, but if you follow
the instructions here: http://jswails.wikidot.com/mac-os-x then you
should get a set of compilers that will work with Amber.
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Wed May 14 2014 - 06:30:03 PDT
