Amber Archive Aug 2011 by author
- Aditya Padhi
- Adrian Roitberg
- Aimin
- Alexej Grjasnow
- Andreas Goetz
- Andrew Jewett
- Andrew Petersen
- Anglea A.
- arikcohen
- belal najjar
- Ben Gamari
- Ben Roberts
- Bill Miller III
- Bill Ross
- Bin Wu
- Brian Radak
- Bruno Rodrigues
- c00jsw00.nchc.narl.org.tw
- caobb0214
- Carlos P Sosa
- Carlos Simmerling
- Carlos Sosa
- case
- Catein Catherine
- Charles Johnson
- Chidambar Kulkarni
- Chinh Su Tran To
- Chirag Vora
- Chris Bryant
- clwg
- D.G. Sprous, PhD
- Daniel Roe
- Daniel Sindhikara
- Danny Xu
- David A Case
- David Cantu
- David Case
- David Condon
- Dean Cuebas
- DEBOSTUTI GHOSHDASTIDAR
- Dmitry Mukha
- Re: [AMBER] Major GPU Update Released (Fri Aug 26 2011 - 09:41:42 PDT)
- Re: [AMBER] libstdc++, Fedora14, Amber11, pmemd.cuda (Fri Aug 26 2011 - 06:07:45 PDT)
- Re: [AMBER] libstdc++, Fedora14, Amber11, pmemd.cuda (Wed Aug 24 2011 - 08:00:17 PDT)
- Re: [AMBER] libstdc++, Fedora14, Amber11, pmemd.cuda (Wed Aug 24 2011 - 05:46:00 PDT)
- Re: [AMBER] Fwd: Is it possible to do REMD for a 12000 atom molecule? (Tue Aug 23 2011 - 13:26:52 PDT)
- Re: [AMBER] Fwd: Is it possible to do REMD for a 12000 atom molecule? (Tue Aug 23 2011 - 12:59:16 PDT)
- Re: [AMBER] Fwd: Is it possible to do REMD for a 12000 atom molecule? (Tue Aug 23 2011 - 12:39:27 PDT)
- Re: [AMBER] Fwd: Is it possible to do REMD for a 12000 atom molecule? (Tue Aug 23 2011 - 12:35:15 PDT)
- [AMBER] Fwd: Is it possible to do REMD for a 12000 atom molecule? (Tue Aug 23 2011 - 12:24:35 PDT)
- [AMBER] libstdc++, Fedora14, Amber11, pmemd.cuda (Tue Aug 23 2011 - 12:15:43 PDT)
- Re: [AMBER] fftw-2.1.5 and Fedora (Tue Aug 23 2011 - 08:37:20 PDT)
- Re: [AMBER] Major GPU Update Released (Tue Aug 23 2011 - 06:51:52 PDT)
- Re: [AMBER] Major GPU Update Released (Sun Aug 21 2011 - 13:27:36 PDT)
- Re: [AMBER] Major GPU Update Released (Sun Aug 21 2011 - 10:24:29 PDT)
- Re: [AMBER] Major GPU Update Released (Sun Aug 21 2011 - 10:13:31 PDT)
- [AMBER] fftw-2.1.5 and Fedora (Sun Aug 21 2011 - 08:51:21 PDT)
- Dr. Vitaly V. Chaban
- E. Nihal Korkmaz
- Emmanuel Baribefe Naziga
- Esam Tolba
- Fenley, Andrew
- Fernando Martín García
- filip fratev
- Francesco Paesani
- FyD
- George A. Khoury
- George Madalin Giambasu
- George Tzotzos
- gloriarg
- Guenegou, Guillaume [ORDFR]
- hari krishna
- Hashem Taha
- Hirdesh Kumar
- Hiromichi Tsurui
- Hongyu Miao
- Hugh Heldenbrand
- Indrajit Deb
- InSuk Joung
- Irene Newhouse
- Ismail, Mohd F.
- Re: [AMBER] NaN Error in mdout, restrt, mdcrd, mdvel files with pmemd.cuda (Sun Aug 28 2011 - 12:38:39 PDT)
- [AMBER] NaN Error in mdout, restrt, mdcrd, mdvel files with pmemd.cuda (Sat Aug 27 2011 - 13:13:50 PDT)
- Re: [AMBER] Potential problem with CUDA version in release 18? (Thu Aug 25 2011 - 13:09:04 PDT)
- Re: [AMBER] Potential problem with CUDA version in release 18? (Thu Aug 25 2011 - 10:39:48 PDT)
- Re: [AMBER] [q4md-fft] General Question about Charge Derivation using RESP (Tue Aug 23 2011 - 09:17:26 PDT)
- Re: [AMBER] Error: Amber 11 and CUDA4.0 (Mon Aug 22 2011 - 22:03:16 PDT)
- Re: [AMBER] Major GPU Update Released (Sat Aug 20 2011 - 11:13:46 PDT)
- Re: [AMBER] Major GPU Update Released (Fri Aug 19 2011 - 11:06:18 PDT)
- Re: [AMBER] Major GPU Update Released (Fri Aug 19 2011 - 10:47:46 PDT)
- Re: [AMBER] Amber 11 bugfix/Cuda update (Fri Aug 19 2011 - 10:23:16 PDT)
- Re: [AMBER] Major GPU Update Released (Fri Aug 19 2011 - 10:14:58 PDT)
- Re: [AMBER] leaprc (Thu Aug 11 2011 - 13:00:28 PDT)
- Re: [AMBER] Inpcrd file problem (Thu Aug 11 2011 - 12:11:22 PDT)
- Re: [AMBER] Inpcrd file problem (Thu Aug 11 2011 - 11:23:47 PDT)
- Re: [AMBER] leaprc (Thu Aug 11 2011 - 11:22:17 PDT)
- Re: [AMBER] PMEMD installation (Wed Aug 10 2011 - 01:31:46 PDT)
- Re: [AMBER] Failure kReduceSoluteCOM with GPU (Tue Aug 09 2011 - 11:14:33 PDT)
- Re: [AMBER] GAFF, Charges, and Cutoff (Tue Aug 09 2011 - 07:53:55 PDT)
- Re: [AMBER] Failure kReduceSoluteCOM with GPU (Tue Aug 09 2011 - 07:47:05 PDT)
- [AMBER] GAFF, Charges, and Cutoff (Mon Aug 08 2011 - 14:19:11 PDT)
- Jagur Lambix
- Jan-Philip Gehrcke
- Jason Swails
- Re: [AMBER] sander compiled by which compiler can show full error mesage? (Tue Aug 30 2011 - 16:30:03 PDT)
- Re: [AMBER] cpptraj: 1) align using a certain region 2) calc rmsd for another region (Tue Aug 30 2011 - 08:04:18 PDT)
- Re: [AMBER] mmpbsa issues (Tue Aug 30 2011 - 07:58:27 PDT)
- Re: [AMBER] MMPBSA.py parallel (Mon Aug 29 2011 - 19:32:55 PDT)
- Re: [AMBER] PBS script (Mon Aug 29 2011 - 13:59:57 PDT)
- Re: [AMBER] PBS script (Mon Aug 29 2011 - 13:34:25 PDT)
- Re: [AMBER] ntf parameters in energy minimization (Mon Aug 29 2011 - 12:45:50 PDT)
- Re: [AMBER] _mmpbsa_py_energy error durint PB calculations (Fri Aug 26 2011 - 18:49:44 PDT)
- Re: [AMBER] how to fill in missing parameters in tleap? (Fri Aug 26 2011 - 18:48:33 PDT)
- Re: [AMBER] Jarzynski and PMEMD (Thu Aug 25 2011 - 16:32:38 PDT)
- Re: [AMBER] Calculating Cpu hours from output file (Thu Aug 25 2011 - 16:29:09 PDT)
- Re: [AMBER] Technical problems with running steered MD (Thu Aug 25 2011 - 09:01:54 PDT)
- Re: [AMBER] mmgbsa.py energy decomposition problem (Wed Aug 24 2011 - 15:28:15 PDT)
- Re: [AMBER] question about creating phantom residues (Wed Aug 24 2011 - 12:15:12 PDT)
- Re: [AMBER] libstdc++, Fedora14, Amber11, pmemd.cuda (Wed Aug 24 2011 - 09:48:51 PDT)
- Re: [AMBER] libstdc++, Fedora14, Amber11, pmemd.cuda (Wed Aug 24 2011 - 07:39:40 PDT)
- Re: [AMBER] antechamber error (Wed Aug 24 2011 - 04:52:30 PDT)
- Re: [AMBER] About sudden simulation box twist (Tue Aug 23 2011 - 15:52:36 PDT)
- Re: [AMBER] Fwd: Is it possible to do REMD for a 12000 atom molecule? (Tue Aug 23 2011 - 14:18:28 PDT)
- Re: [AMBER] ESPGEN (Tue Aug 23 2011 - 14:40:30 PDT)
- Re: [AMBER] About sudden simulation box twist (Tue Aug 23 2011 - 14:30:55 PDT)
- Re: [AMBER] libstdc++, Fedora14, Amber11, pmemd.cuda (Tue Aug 23 2011 - 14:38:46 PDT)
- Re: [AMBER] ESPGEN (Tue Aug 23 2011 - 14:21:13 PDT)
- Re: [AMBER] Using iwrap with harmonic restraints (Tue Aug 23 2011 - 08:03:20 PDT)
- Re: [AMBER] MMPBSA not installed in amber11 (Tue Aug 23 2011 - 06:28:22 PDT)
- Re: [AMBER] MD output files (Tue Aug 23 2011 - 04:23:48 PDT)
- Re: [AMBER] MMPBSA not installed in amber11 (Tue Aug 23 2011 - 04:20:07 PDT)
- Re: [AMBER] ESPGEN (Mon Aug 22 2011 - 14:30:52 PDT)
- Re: [AMBER] compilation problem with bugfix 1 to 17 (Mon Aug 22 2011 - 12:32:54 PDT)
- Re: [AMBER] Major GPU Update Released (Sun Aug 21 2011 - 10:17:34 PDT)
- Re: [AMBER] hbond atom mask in cpptraj (Sat Aug 20 2011 - 11:27:30 PDT)
- Re: [AMBER] nmropt and restraint_wt (Sat Aug 20 2011 - 11:19:24 PDT)
- Re: [AMBER] Problem installing AmverTools 1.5 on Mac (Fri Aug 19 2011 - 16:05:59 PDT)
- Re: [AMBER] TUTORIAL B3 - SECTION 6 (Fri Aug 19 2011 - 15:51:19 PDT)
- Re: [AMBER] Amber 11 bugfix (Fri Aug 19 2011 - 08:04:54 PDT)
- Re: [AMBER] Using iwrap with harmonic restraints (Thu Aug 18 2011 - 17:50:55 PDT)
- Re: [AMBER] molecule out box after reimage (Thu Aug 18 2011 - 17:41:08 PDT)
- Re: [AMBER] Iron in CHAMBER: chemicalSymbolToZ() cannot map symbol: FE, to a Z value (Thu Aug 18 2011 - 07:49:53 PDT)
- Re: [AMBER] Coordinate resetting cannot be accomplished, deviation is too large (Thu Aug 18 2011 - 07:40:00 PDT)
- Re: [AMBER] Executing Parmchk (Thu Aug 18 2011 - 07:36:06 PDT)
- Re: [AMBER] Coordinate resetting cannot be accomplished, deviation is too large (Wed Aug 17 2011 - 19:56:21 PDT)
- Re: [AMBER] AmberTools installation difficulties on Mac OSX (Wed Aug 17 2011 - 15:00:26 PDT)
- Re: [AMBER] strategies to terminate and continue a MD run (Wed Aug 17 2011 - 10:40:00 PDT)
- Re: [AMBER] How to specify a quantum region of a system (Wed Aug 17 2011 - 10:38:55 PDT)
- Re: [AMBER] partial atomic charges parametarization in ff10 (Tue Aug 16 2011 - 19:41:48 PDT)
- Re: [AMBER] Problems with MMPBSA and steered molecular dynamics (Tue Aug 16 2011 - 14:13:58 PDT)
- Re: [AMBER] Old problem with restart (Tue Aug 16 2011 - 14:10:22 PDT)
- Re: [AMBER] No data for 0+2 PB PB 0 problem in Amber10 mm_pbsa (Tue Aug 16 2011 - 06:02:58 PDT)
- Re: [AMBER] _mmpbsa_py_energy error durint PB calculations (Tue Aug 16 2011 - 04:20:48 PDT)
- Re: [AMBER] Old problem with restart (Tue Aug 16 2011 - 04:16:11 PDT)
- Re: [AMBER] _mmpbsa_py_energy error durint PB calculations (Sun Aug 14 2011 - 07:20:48 PDT)
- Re: [AMBER] DNA-22mer (Sat Aug 13 2011 - 12:19:31 PDT)
- Re: [AMBER] Amber11 re-compiling (Sat Aug 13 2011 - 06:15:04 PDT)
- Re: [AMBER] error running mmpbsa.py (Sat Aug 13 2011 - 05:44:39 PDT)
- Re: [AMBER] residue list (Fri Aug 12 2011 - 17:30:09 PDT)
- Re: [AMBER] DNA-22mer (Fri Aug 12 2011 - 07:54:18 PDT)
- Re: [AMBER] PTRAJ; how to extract selected atoms from mdcrd to PDB file. (Fri Aug 12 2011 - 04:11:41 PDT)
- Re: [AMBER] GBSA (Thu Aug 11 2011 - 14:13:02 PDT)
- Re: [AMBER] Inpcrd file problem (Thu Aug 11 2011 - 14:12:10 PDT)
- Re: [AMBER] Inpcrd file problem (Thu Aug 11 2011 - 14:09:16 PDT)
- Re: [AMBER] nothing wtitten in .out file after heating (Thu Aug 11 2011 - 09:57:42 PDT)
- Re: [AMBER] MMPBSA.py: Effect on ionic strength concentration on Delta G (Thu Aug 11 2011 - 08:19:29 PDT)
- Re: [AMBER] How to calculate the electrostatic contribution to "solvation free energy"? (Thu Aug 11 2011 - 06:52:49 PDT)
- Re: [AMBER] rst to mdcrd (Thu Aug 11 2011 - 06:32:55 PDT)
- Re: [AMBER] MMPBSA.py: Effect on ionic strength concentration on Delta G (Thu Aug 11 2011 - 06:30:24 PDT)
- Re: [AMBER] How to extract selected residues from mdcrd to PDB file using ptraj? (Wed Aug 10 2011 - 20:29:48 PDT)
- Re: [AMBER] How to extract every 10th snapshot from mdcrd to PDB format? (Wed Aug 10 2011 - 20:17:05 PDT)
- Re: [AMBER] trying to make parallel Amber on Centos (Wed Aug 10 2011 - 20:16:16 PDT)
- Re: [AMBER] MMPBSA.py: Effect on ionic strength concentration on Delta G (Wed Aug 10 2011 - 20:13:14 PDT)
- Re: [AMBER] Proble related to the correlation function (Wed Aug 10 2011 - 15:57:26 PDT)
- Re: [AMBER] How to calculate the electrostatic contribution to "solvation free energy"? (Wed Aug 10 2011 - 15:55:53 PDT)
- Re: [AMBER] Cholesterol and Cholesteryl hemisuccinate (Wed Aug 10 2011 - 15:15:13 PDT)
- Re: [AMBER] Xleap installation problem (Wed Aug 10 2011 - 15:06:23 PDT)
- Re: [AMBER] MMPBSA.py: Effect on ionic strength concentration on Delta G (Wed Aug 10 2011 - 14:04:59 PDT)
- Re: [AMBER] GBSA calculations with MgATP ligand (Tue Aug 09 2011 - 19:43:38 PDT)
- Re: [AMBER] mol2 to PREP (Tue Aug 09 2011 - 15:13:27 PDT)
- Re: [AMBER] mutating a residue to another residue on a protein structure (Tue Aug 09 2011 - 14:04:41 PDT)
- Re: [AMBER] GBSA calculations with MgATP ligand (Tue Aug 09 2011 - 13:16:53 PDT)
- Re: [AMBER] trouble compiling AmberTools 1.5 (Tue Aug 09 2011 - 11:38:07 PDT)
- Re: [AMBER] addition of massless particle to benzene that interacts only with massless particles in other benzene molecules (Tue Aug 09 2011 - 09:25:10 PDT)
- Re: [AMBER] Failure kReduceSoluteCOM with GPU (Tue Aug 09 2011 - 09:15:05 PDT)
- Re: [AMBER] need suggestion about cutoff (Mon Aug 08 2011 - 19:56:11 PDT)
- Re: [AMBER] GAFF, Charges, and Cutoff (Mon Aug 08 2011 - 18:34:16 PDT)
- Re: [AMBER] DNA-22mer (Mon Aug 08 2011 - 14:06:28 PDT)
- Re: [AMBER] error in pmemd parallel installation (Mon Aug 08 2011 - 07:37:32 PDT)
- Re: [AMBER] error in pmemd parallel installation (Mon Aug 08 2011 - 06:34:24 PDT)
- Re: [AMBER] free energy decomposition (Mon Aug 08 2011 - 06:29:21 PDT)
- Re: [AMBER] EQMMM modification (Sun Aug 07 2011 - 19:55:32 PDT)
- Re: [AMBER] EPTOT shows big difference between the different force fields (Fri Aug 05 2011 - 21:59:55 PDT)
- Re: [AMBER] Amber 11 parallel installation problem (Fri Aug 05 2011 - 21:48:16 PDT)
- Re: [AMBER] How to know whether the sander is running parallel (Fri Aug 05 2011 - 19:23:55 PDT)
- Re: [AMBER] How to know whether the sander is running parallel (Fri Aug 05 2011 - 11:50:29 PDT)
- Re: [AMBER] AmberTools 1.5 top and cord files (Fri Aug 05 2011 - 05:46:40 PDT)
- Re: [AMBER] 6 error: No torsion terms for ca-ca-ce-c2 (Thu Aug 04 2011 - 09:25:24 PDT)
- Re: [AMBER] AmberTools 1.5 nmode error (Thu Aug 04 2011 - 09:24:00 PDT)
- Re: [AMBER] Problems when I wanted to restart the MD production (Thu Aug 04 2011 - 07:44:32 PDT)
- Re: [AMBER] Problems when I wanted to restart the MD production (Wed Aug 03 2011 - 19:31:04 PDT)
- Re: [AMBER] AmberTools 1.5 top and cord files (Wed Aug 03 2011 - 19:25:08 PDT)
- Re: [AMBER] MD stop but this job in cluster still run (Wed Aug 03 2011 - 11:25:54 PDT)
- Re: [AMBER] loadPdb segmentation fault (Wed Aug 03 2011 - 09:15:17 PDT)
- Re: [AMBER] loadPdb segmentation fault (Wed Aug 03 2011 - 06:43:33 PDT)
- Re: [AMBER] loadPdb segmentation fault (Tue Aug 02 2011 - 21:38:22 PDT)
- Re: [AMBER] loadPdb segmentation fault (Tue Aug 02 2011 - 20:08:45 PDT)
- Re: [AMBER] About running sander parallel (Tue Aug 02 2011 - 17:09:44 PDT)
- Re: [AMBER] ambpdb not installed (Tue Aug 02 2011 - 04:53:14 PDT)
- Re: [AMBER] Using NMR restraints during minimization (Tue Aug 02 2011 - 04:51:49 PDT)
- Re: [AMBER] 2011年7月20日 19:53:32 自动保存草稿 (Tue Aug 02 2011 - 04:35:38 PDT)
- Re: [AMBER] Using NMR restraints during minimization (Mon Aug 01 2011 - 20:41:11 PDT)
- Re: [AMBER] About running sander parallel (Mon Aug 01 2011 - 20:37:30 PDT)
- Re: [AMBER] MMGBSA error (Mon Aug 01 2011 - 17:52:09 PDT)
- Re: [AMBER] loadPdb segmentation fault (Mon Aug 01 2011 - 13:53:57 PDT)
- Jennifer L. Muzyka
- Jesper Sørensen
- Joan Torras
- Jose Borreguero
- Jurica Novak
- Kamali Sripathi
- Kshatresh Dutta Dubey
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- 于丽影 Liying E\. Yu
- 鶴井博理
- Last message date: Wed Aug 31 2011 - 20:30:02 PDT
- Archived on: Wed Apr 24 2024 - 05:54:23 PDT
