Hi Amber users,
I want to count the number of hbond durig simulation, then i do rimage with ptraj like :
trajin md.mdcrd
center :1-3
trajout reimaged.mdcrd
image center familiar
1/ a part of my molecule is sometimes out of box !!! How to do correction?
2/ is there any software like vmd to do this ?
3/ what is the complete and correct command to do this with vmd
Thanks in advance for any help
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Received on Thu Aug 18 2011 - 16:00:02 PDT
