On Sat, Aug 13, 2011 at 8:34 AM, Siavoush Dastmalchi <
Dastmalchi.s.tbzmed.ac.ir> wrote:
> Dear List,
> I am getting the following error. Is that because of the version of python
> (2.4.3) on my system?
>
What version of MMPBSA.py are you trying to run? If you update to
AmberTools 1.5, that version is compatible with Python 2.4, but also comes
with its own (optional) Python 2.6 to ensure compatibility. It is also a
more stable release (and will run everything but decomposition and QM/MM
using nothing but tools found in AmberTools).
> [rahbar.cluster DOF1.7.2]$ $AMBERHOME/bin/MMPBSA.py -O -i mmpbsa.in -o
> FINAL_RESULTS_MMPBSA.dat -sp dof1_na_solvated.prmtop -cp dof1.prmtop -rp
> dof1_zn.prmtop -lp dna.prmtop -y *.mdcrd
> Traceback (most recent call last):
> File "/share/apps/amber11/bin/MMPBSA.py", line 44, in ?
> import inputparse, utils, alamdcrd # (2)
> File "/share/apps/amber11/bin/utils.py", line 65, in ?
> from mdin import mdin
> ImportError: No module named mdin
>
This is not a Python 2.4 issue -- it's an issue with the installation (the
mdin.py file is missing). Either re-install MMPBSA.py or upgrade to
AmberTools 1.5.
HTH,
Jason
>
> Cheers, Siavoush
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> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Sat Aug 13 2011 - 06:00:03 PDT
