Hi All,
Sorry for this lower-level question, but I searched the archive and still
did not solve it.
So I was trying to load a pdb file (only one oligosaccharide molecule) after
source leaprc.GLYCAM_06, but what I got was
ERROR: Comparing atoms
.R<0hA 1>.A<C3 14>,
.R<0hA 1>.A<C1 1>,
.R<0hA 1>.A<H2 19>, and
.R<0hA 1>.A<O2 20>
to atoms
.R<0hA 1>.A<C3 14>,
.R<2hA 1>.A<C1 1>,
.R<0hA 1>.A<H2 19>, and
.R<0hA 1>.A<C1 1>
This error may be due to faulty Connection atoms.
!FATAL ERROR----------------------------------------
!FATAL: In file [chirality.c], line 140
!FATAL: Message: Atom named C1 from 2hA did not match !
!
!ABORTING.
So what it really means by "faulty Connection atoms"? I have already changed
the sugar names according to GLYCAM naming convention.
Any help is appreciated!
Yun
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Received on Thu Aug 11 2011 - 21:00:02 PDT
