Re: [AMBER] libstdc++, Fedora14, Amber11, pmemd.cuda

From: Jason Swails <jason.swails.gmail.com>
Date: Wed, 24 Aug 2011 12:48:51 -0400

On Wed, Aug 24, 2011 at 11:00 AM, Dmitry Mukha <dvmukha.gmail.com> wrote:

> I've tried to feed ld with LD_LIBRARY_PATH that includes system lib64
> directories (/* and /usr/*), but it didn't help. So the explicit pointing
> of
> the flag is the right way. On Fedora 12 linking succeeded without
> additional
> manipulations, so it is evidently distributive-depended issue.
>

What were the compiler versions in each case? For some reason I think it's
gcc-4.5 in Fedora 14 but I'm not sure.

It may be that the GNU compilers are getting increasingly fussy about
compliance with standards.


> 2011/8/24 Jason Swails <jason.swails.gmail.com>
>
> > Ah, I didn't see that you got it to work. It seems pretty strange that
> you
> > have to explicitly include this library in the config.h... Did you try
> > adding /usr/lib64 to LD_LIBRARY_PATH? I always thought the standard c++
> > library was linked by default... but maybe it's a CUDA compiler issue.
> >
> > It's impossible for me to do more than speculate without being able to
> > reproduce that issue, but thanks for the report.
> >
> > All the best,
> > Jason
> >
> >
> --
> Sincerely,
> Dmitry Mukha
> Institute of Bioorganic Chemistry, NAS, Minsk, Belarus
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>



-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Aug 24 2011 - 10:00:02 PDT
Custom Search