[AMBER] question about creating phantom residues

From: <moitrayee.mbu.iisc.ernet.in>
Date: Thu, 25 Aug 2011 00:00:56 +0530 (IST)

Dear Amber Users,

Is there a way by which I can judiciously remove all bond-length, angle and
dihedral angle PE terms for a chosen residue resulting in the formation of a
neutral (no partial charges or unphysical) residue side-chain in Amber9.

Any help will be highly appreciated.

Thanks a lot in apprehension.

Sincere regards,
Moitrayee 


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Received on Wed Aug 24 2011 - 12:00:03 PDT
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