Re: [AMBER] ntr=1 nmropt=1

From: Mark Williamson <mjw.mjw.name>
Date: Fri, 19 Aug 2011 11:16:34 +0100

Fernando Martín García wrote:
> Dear amber users:
>
> I've tried all possibilities i've found in amber reflector but i
> haven't found where is the problem in my input:
>
> cat << EOF > ${JOB}_std${j}.in
> equil_md
> &cntrl
> nmropt = 1, ntx = 5, irest = 1, ntrx = 1,
> ntxo = 1, ntr = 1,
> ntpr = 1000, ntwx =1000,
> ntf = 2, ntb = 2, dielc = 1.0, ntc=2,
> cut = 12, nsnb = 10,
> imin = 0,
> nstlim = 10000, dt = 0.002,
> temp0 = 300, tempi = 300,
> ntt = 1,
> ntp = 1,
> &end
> &wt type='END'
> &end
> DISANG= rst_std1.dat
> LISTOUT= rst_std1.lis
> PHOSPHOROUS RESTRAIN
> 20.0
> FIND
> P1 * * *
> SEARCH
> RES 190
> END
> END
> EOF

Dear Fernando,

I think this is a scripting issue. Attempting to reproduce this problem
here, suggests that the EOF token needs start at the beginning of the
line within your script, i.e. :

...blah...
 RES 190
 END
 END
EOF

Regards,

Mark

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Received on Fri Aug 19 2011 - 03:30:02 PDT
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