it seems you set your env $AMBERHOME with a spare slash, so see it
/opt/amber10*//*exe/ambpdb
there are two slashes after amber10
On Tue, Aug 2, 2011 at 12:58 AM, Chirag Vora <chirag740.gmail.com> wrote:
> I want to generate a PDB file from prmtop file using "ambpdb".
>
> I execute the following command:
> $AMBERHOME/exe/ambpdb -p filename.prmtop < filename.rst > filename.pdb
>
> It gives an output that says:
> bash: /opt/amber10//exe/ambpdb: No such file or directory
>
> When I see $AMBERHOME/exe/ there is no ambpdb within.
>
> SUPPLEMENTARY INFORMATION:
> OS Ubuntu 10.04 LTS. Amber 10 (parallel). Compiler used for installation
> gfortran.
>
> Should I reinstall Amber or is there a way out?
>
> --
> Chirag V. Vora <chiragvora.live.com>
> Department of Pharmacoinformatics<
> http://niper.gov.in/depart.htm#Pharmacoinformatics>
> ,
> National Institute of Pharmaceutical Education and Research<
> http://niper.gov.in>
> *Sector 67, S.A.S. Nagar, *
> *Punjab (INDIA) - 160 062, *
> *Phone: +91-9814187740*
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
--
Bruno Barbosa Rodrigues
PhD Student - Physics Department
Universidade Federal de Minas Gerais - UFMG
Belo Horizonte - Brazil
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Received on Tue Aug 02 2011 - 02:30:02 PDT
