type
locate ambpdb
and see if it's somewhere else
On Tue, Aug 2, 2011 at 6:07 AM, Bruno Rodrigues <bbrodrigues.gmail.com>wrote:
> it seems you set your env $AMBERHOME with a spare slash, so see it
>
> /opt/amber10*//*exe/ambpdb
>
> there are two slashes after amber10
>
>
> On Tue, Aug 2, 2011 at 12:58 AM, Chirag Vora <chirag740.gmail.com> wrote:
>
>> I want to generate a PDB file from prmtop file using "ambpdb".
>>
>> I execute the following command:
>> $AMBERHOME/exe/ambpdb -p filename.prmtop < filename.rst > filename.pdb
>>
>> It gives an output that says:
>> bash: /opt/amber10//exe/ambpdb: No such file or directory
>>
>> When I see $AMBERHOME/exe/ there is no ambpdb within.
>>
>> SUPPLEMENTARY INFORMATION:
>> OS Ubuntu 10.04 LTS. Amber 10 (parallel). Compiler used for installation
>> gfortran.
>>
>> Should I reinstall Amber or is there a way out?
>>
>> --
>> Chirag V. Vora <chiragvora.live.com>
>> Department of Pharmacoinformatics<
>> http://niper.gov.in/depart.htm#Pharmacoinformatics>
>> ,
>> National Institute of Pharmaceutical Education and Research<
>> http://niper.gov.in>
>> *Sector 67, S.A.S. Nagar, *
>> *Punjab (INDIA) - 160 062, *
>> *Phone: +91-9814187740*
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
>
> --
> --
> Bruno Barbosa Rodrigues
> PhD Student - Physics Department
> Universidade Federal de Minas Gerais - UFMG
> Belo Horizonte - Brazil
>
--
--
Bruno Barbosa Rodrigues
PhD Student - Physics Department
Universidade Federal de Minas Gerais - UFMG
Belo Horizonte - Brazil
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Received on Tue Aug 02 2011 - 02:30:03 PDT
