I want to generate a PDB file from prmtop file using "ambpdb".
I execute the following command:
$AMBERHOME/exe/ambpdb -p filename.prmtop < filename.rst > filename.pdb
It gives an output that says:
bash: /opt/amber10//exe/ambpdb: No such file or directory
When I see $AMBERHOME/exe/ there is no ambpdb within.
SUPPLEMENTARY INFORMATION:
OS Ubuntu 10.04 LTS. Amber 10 (parallel). Compiler used for installation
gfortran.
Should I reinstall Amber or is there a way out?
--
Chirag V. Vora <chiragvora.live.com>
Department of Pharmacoinformatics<http://niper.gov.in/depart.htm#Pharmacoinformatics>
,
National Institute of Pharmaceutical Education and Research<http://niper.gov.in>
*Sector 67, S.A.S. Nagar, *
*Punjab (INDIA) - 160 062, *
*Phone: +91-9814187740*
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Received on Mon Aug 01 2011 - 21:00:05 PDT