Re: [AMBER] problem with Cadmium parameters and running minimization

From: Ben Roberts <ben.roberts.geek.nz>
Date: Fri, 26 Aug 2011 11:01:37 -0400

Hi Hashem,

On 26/8/2011, at 10:57 a.m., Hashem Taha wrote:

> I am trying to parameterize a bimetallic Cd2+ using MCPB. I have obtained
> all the required parameters for my system (these are attached). I am trying
> to minimize the system but I am running into many problems.

If you have Amber 11, are you able to produce a trajectory during your minimisation? That may help to show whether, for example, atoms are flying apart.

Regards,
Ben

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Received on Fri Aug 26 2011 - 08:30:02 PDT
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