Hi AMBER Team
We have installed Amber 10 with Amber Tools 1.0 on SLES 11.1. It is successfully installed.There were no errors during the compilation of Amber and Amber tools.But after that, we are not getting XLeap. We went inside src/leap directoryand try to compile Leap individually to get XLeap, it is giving the following error:-------------------------------------------------------------------------------------------------------------------------------sgiUV:/data1/apps/amber/10/intel-mkl-openmpi/src/leap # makeCompiling basic programscd src/leap; make installteLeapmake[1]: Entering directory `/data1/apps/amber/10/intel-mkl-openmpi/src/leap/src/leap'icc -o teLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o
list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o tLeap.o -lmmv teLeap ../../../../exemake[1]: Leaving directory `/data1/apps/amber/10/intel-mkl-openmpi/src/leap/src/leap'Copying shell scriptsed -e "s?BINDIR?/data1/apps/amber/10/intel-mkl-openmpi/bin?" -e "s?DATDIR?/data1/apps/amber/10/intel-mkl-openmpi/dat?;" tleap > /data1/apps/amber/10/intel-mkl-openmpi/bin/tleapchmod +x /data1/apps/amber/10/intel-mkl-openmpi/bin/tleapmake skip_xleapmake[1]: Entering directory `/data1/apps/amber/10/intel-mkl-openmpi/src/leap'NOTE: skipping the building of xleap as X11 libraries are not installed orNOTE: -nox11 was specified as an option to configure.make[1]: Leaving directory
`/data1/apps/amber/10/intel-mkl-openmpi/src/leap'
sgiUV:/data1/apps/amber/10/intel-mkl-openmpi/src/leap #
We found that, all x11 rpms are already installed.
sgiUV:/data1/apps/amber/10/intel-mkl-openmpi/src/leap # rpm -qa | grep
xorgxorg-x11-libICE-32bit-7.4-1.15xorg-x11-libxcb-32bit-7.4-1.20.34xorg-x11-libXrender-32bit-7.4-1.14xorg-x11-libXpm-7.4-1.17xorg-x11-libs-32bit-7.4-8.24.2xorg-x11-7.4-9.24.15xorg-x11-libICE-7.4-1.15xorg-x11-libX11-32bit-7.4-5.5xorg-x11-libxkbfile-7.4-1.14xorg-x11-libXfixes-32bit-7.4-1.14xorg-x11-libXmu-7.4-1.17xorg-x11-libXprintUtil-7.4-1.17xorg-x11-server-7.4-27.19.19xorg-x11-libXau-7.4-1.15xorg-x11-libXau-32bit-7.4-1.15xorg-x11-libSM-32bit-7.4-1.18xorg-x11-libXt-32bit-7.4-1.17xorg-x11-libXfixes-7.4-1.14xorg-x11-fonts-core-7.4-1.20xorg-x11-libXv-7.4-1.14xorg-x11-libXp-32bit-7.4-1.14xorg-x11-xauth-7.4-9.24.15xorg-x11-Xvnc-7.4-27.19.19xorg-x11-driver-video-radeonhd-1.3.0_20100325_f6c9991-1.2.20xorg-x11-libXdmcp-7.4-1.15xorg-x11-libfontenc-7.4-1.15xorg-x11-libSM-7.4-1.18xorg-x11-libXt-7.4-1.17xorg-x11-libXpm-32bit-7.4-1.17xorg-x11-libXext-32bit-7.4-1.16.21xorg-x11-libXp-7.4-1.14xorg-x11-fonts-7.4-1.20xorg-x11-driver-video-7.4-40.26.20xorg-x11-libxcb-7.4
-1.20.34xorg-x11-libX11-7.4-5.5xorg-x11-libxkbfile-32bit-7.4-1.14xorg-x11-libXext-7.4-1.16.21xorg-x11-libXmu-32bit-7.4-1.17xorg-x11-libXprintUtil-32bit-7.4-1.17xorg-x11-server-extra-7.4-27.19.19xorg-x11-driver-input-7.4-13.26.7xorg-x11-libfontenc-32bit-7.4-1.15xorg-x11-libXrender-7.4-1.14xorg-x11-libXv-32bit-7.4-1.14xorg-x11-libs-7.4-8.24.2
---------------------------------------------------------------------------------------------------------------------Please suggest the solution.
ThanksRameshfaculty, Dept of Biotechnology Jain U'sty Bangalore
--- On Wed, 10/8/11, kureeckal ramesh <kureeckalramesh.yahoo.co.in> wrote:
From: kureeckal ramesh <kureeckalramesh.yahoo.co.in>
Subject: [AMBER] Xleap installation problem
To: "AMBER Mailing List" <amber.ambermd.org>
Cc: zaheer.sharvani.locuz.com
Date: Wednesday, 10 August, 2011, 6:06 PM
Hi Amber users
We have installed Amber 10 on SGI Altix UV 10 with SLES 11.1
But the new version of Amber Tools 1.5 are giving problem at the time of 'make'
It is giving the following error:
run this script in the gdv directorychmod 644 /data1/applications/amber/Tools/amber11/AmberTools/lib/libnetcdf.achmod: cannot access`/data1/applications/amber/Tools/amber11/AmberTools/lib/libnetcdf.a':No such file or directorymake[3]: *** [install-libLTLIBRARIES] Error 1make[3]: Leaving directory`/data1/applications/amber/Tools/amber11/AmberTools/src/netcdf/src/libsrc'make[2]: *** [install-am] Error 2make[2]: Leaving directory`/data1/applications/amber/Tools/amber11/AmberTools/src/netcdf/src/libsrc'make[1]: *** [install-recursive] Error 1make[1]: Leaving directory`/data1/applications/amber/Tools/amber11/AmberTools/src/netcdf/src'make: *** [/data1/applications/amber/Tools/amber11/lib/libnetcdf.a] Error 2
Please kindly advice the solution.
- Ramesh
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Received on Thu Aug 18 2011 - 00:30:02 PDT
