Thanks, Jason. I just generated the error messages again and realized that
somehow the Intel compiler stepped in although I specified the GNU
compilers. After I fixed my PATH variable, the problem is gone.
Thanks,
Jacky
-----Original Message-----
From: Jason Swails [mailto:jason.swails.gmail.com]
Sent: Monday, August 22, 2011 3:33 PM
To: AMBER Mailing List
Subject: Re: [AMBER] compilation problem with bugfix 1 to 17
On Mon, Aug 22, 2011 at 1:50 PM, Hongyu Miao <jackymiao.gmail.com> wrote:
> Hi, All
>
> I'm not sure it's just me or someone else also met this problem. When
> building the parallel level version of AmberTools using mpi and gnu,
> one file named "thermo.f" triggered a lot of errors such as mismatched
> parentheses. Does anyone know what's going on here?
>
We need more information than this (for instance the whole error message).
Even knowing the file name is not enough:
$ find . -name thermo.f
./AmberTools/src/mopac6/src/thermo.f
./AmberTools/src/ptraj/thermo.f
./src/nmode/thermo.f
There are 3 thermo.f files in Amber (in various locations), so we don't even
know what file is causing your issue. The first thing I would suggest is to
apply the latest bug fixes to a fresh copy of Amber11 and AmberTools 1.5.
If that doesn't work, then post your full error message here.
HTH,
Jason
>
>
> BTW, all patched have been applied before compiling.
>
>
>
> Thanks,
>
> Hongyu
>
>
>
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Mon Aug 22 2011 - 14:00:02 PDT
