Re: [AMBER] Protein-sugar interactions

From: David A Case <case.biomaps.rutgers.edu>
Date: Mon, 1 Aug 2011 09:46:01 -0400

On Mon, Aug 01, 2011, Thomas Exner wrote:
>
> I am trying to simulate the interaction between a protein and mannose
> and modifications of mannose. Since there are no parameters for these
> modifications....

Why not use GLYCAM? Sections 2.9 and 3.5 of the AmberTools Users' Manual
gives details, including mannose, man-9, etc.

...dac


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Received on Mon Aug 01 2011 - 07:00:03 PDT
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