Re: [AMBER] Amber 11 parallel installation problem

From: Jason Swails <jason.swails.gmail.com>
Date: Sat, 6 Aug 2011 00:48:16 -0400

It looks like memory_module.f is being compiled in the F77 fixed-format way,
in which columns 1-6 are reserved, and nothing past column 72 is read.

I've never seen this issue, so I'm guessing something abnormal happened in
your case. Try extracting a fresh amber11 and AmberTools 1.5 (don't forget
to apply all bugfixes) and compiling again.

If that doesn't work, we'll need more information about exactly what you did
and what your system specifications are.

(Also, I think some people have reported problems compiling Amber with the
GCC 4.1 compiler version, though I don't recall this error being caused by
it. It may be worth upgrading or using the intel compilers if available to
solve this issue).

HTH,
Jason

2011/8/5 ÓÚÀöÓ° Liying E\. Yu <liying_ealing_yu.jlu.edu.cn>

> Dear all,
>
> I am trying to install amber 11 on my cluster.
> the error message in my amber 11 paralle installation is
> ============
> Error: Unclassifiable statement at (1)
> Error: Unexpected end of file in '_memory_module.f'
> make[1]: *** [memory_module.o] Error 1
> make[1]: Leaving directory `/soft/amber11/src/sander'
> make: *** [parallel] Error 2
> ============
> and the detailed message and configuration file are attatched
>
> I am not sure if it's the mpi compiler problem, the mpif90&mpicc parameters
> as following:
> ============
> # mpif90 -show
> gfortran -m32 -ldl -ldl -ldl -ldl -I/opt/intel/impi/
> 4.0.0.028/ia32/include/gfortran/4.1.0 -I/opt/intel/impi/
> 4.0.0.028/ia32/include -L/opt/intel/impi/4.0.0.028/ia32/lib-L/opt/intel/impi/
> 4.0.0.028/ia32/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker
> /opt/intel/impi/4.0.0.028/ia32/lib -Xlinker -rpath -Xlinker
> /opt/intel/mpi-rt/4.0.0 -lmpi -lmpigf -lmpigi -lpthread -lpthread -lpthread
> -lpthread -lrt
> # mpicc -show
> gcc -m32 -ldl -ldl -ldl -ldl -I/opt/intel/impi/4.0.0.028/ia32/include-L/opt/intel/impi/
> 4.0.0.028/ia32/lib -L/opt/intel/impi/4.0.0.028/ia32/lib -Xlinker
> --enable-new-dtags -Xlinker -rpath -Xlinker /opt/intel/impi/
> 4.0.0.028/ia32/lib -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/4.0.0 -lmpi
> -lmpigf -lmpigi -lpthread -lpthread -lpthread -lpthread -lrt
> =============
>
> Any advice? thanks a lot,
>
>
> ----------------
>
>
> Yours Sincerely,
>
> Liying E. Yu
> Software Technician
> Institute of Theoretical Chemistry, North Qianwei, Jilin University, China
> Tel: 86-431 8849 8591
> Mol: 86-150 4303 4241
> Email: liying_ealing_yu.jlu.edu.cn
> http://tcclab.jlu.edu.cn/
> Address£º2519 Jiefang Road, Institute of Theoretical Chemistry, Changchun
> Jilin, 130023, China
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
>


-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Fri Aug 05 2011 - 22:00:02 PDT
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