Hello all,
I wrote a script to calculate the change of secstructure with time.
The script:
trajin md.mdcrd
secstruct out sec.dat time 2 :1-127
And I got the file "sec.dat". It contains the time( each snapshot),
the residues and the secondary structure.
Like this:
res111 112 113 114
115 116
11 0 b 0 0 0 B
12 0 0 0 0 B B
13 0 b 0 0 0 B
The x-axis "res111... " represents the residue. The y-axis"11 12 ..."
represents the snapshot. And the letters "b,B" represent the secondary
structure. So how to make a graph to present the change of secondary
structure with time?
Thanks!
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Received on Wed Aug 24 2011 - 06:00:03 PDT
