Yes, it works if I provide the full path to bugfix.1to17.tar.bz2: ./apply_bugfix.x /home/../amber11/bugfix.1to17.tar.bz2
but AMBERHOME is well defined in my case. Anyway..thanks.
Filip
----- Original Message -----
From: Jennifer L. Muzyka <jennifer.muzyka.centre.edu>
To: AMBER Mailing List <amber.ambermd.org>
Cc:
Sent: Friday, August 19, 2011 5:54 PM
Subject: Re: [AMBER] Amber 11 bugfix
When I type echo $AMBERHOME, I get /Users/jennifer.muzyka/opt/amber11. I have downloaded the script and the patch tarball both to the same amber11 directory.
Jennifer
On Aug 19, 2011, at 10:51 AM, David A Case wrote:
> On Fri, Aug 19, 2011, Jennifer L. Muzyka wrote:
>
>> I'm trying to install the Amber 11 bugfixes before installing
>> Amber 11. When I try to apply the bugfix patch as described
>> at ambermd.org/bugfixes11.html (using ./apply_bugfix.x
>> bugfix.1to17.tar.bz2), I get the following error:
>> tar: Error opening archive: Failed to open 'bugfix.1to17.tar.bz2': No
>> such file or directory
>
> I'm guessing this arises because your AMBERHOME environment variable is not
> set correctly. It should point to the amber11 tree. Can you see if that is
> the problem?
>
> ...dac
>
>
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Jennifer L. Muzyka
Professor of Chemistry
Centre College
600 West Walnut Street
Danville, KY 40422
jennifer.muzyka.centre.edu
http://web.centre.edu/muzyka/
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Received on Fri Aug 19 2011 - 11:00:02 PDT
