Hi
I tried with the following config, but i got the same error.
*./configure linux_em64t ifort intelmpi pubfft nobintraj*
/home/p_kumar/intel/composerxe-2011.5.220/compiler/lib/intel64/libsvml.so:
undefined reference to `__intel_cpu_indicator_init'
/home/p_kumar/intel/composerxe-2011.5.220/compiler/lib/intel64/libsvml.so:
undefined reference to `__intel_cpu_indicator'
collect2: ld returned 1 exit status
make[1]: *** [pmemd] Error 1
make[1]: Leaving directory `/home/p_kumar/amber10/src/pmemd/src'
make: *** [all] Error 2
On Mon, Aug 8, 2011 at 6:57 PM, hari krishna <haricoolguy111.gmail.com>wrote:
> currently i dont have intel MPI library can i use gfortran as a compiler
>
> On Mon, Aug 8, 2011 at 6:45 PM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
>
>> Hi,
>> Your MPI_HOME is pointing to a gnu compilation, but you are attempting to
>> compile with intel compilers. For ./configure ifort you should use an MPI
>> installation compiled with intel compilers as well.
>>
>> -Dan
>>
>> On Aug 8, 2011, at 8:42 AM, hari krishna <haricoolguy111.gmail.com>
>> wrote:
>>
>> > I am using AMBER10 below is the config.h file
>> > platform: X86_64
>> > compiler: ifort
>> > mpi: mpich2
>> > not using netcdf as default
>> >
>> > *./configure linux64_opteron ifort mpich2 pubfft nobintraj* (this is the
>> one
>> > i tried now)
>> >
>> > MATH_DEFINES =
>> > MATH_LIBS =
>> > IFORT_RPATH =
>> >
>> /home/p_kumar/intel/composerxe-2011.5.220/compiler/lib/intel64:/home/p_kumar/intel/composerxe-2011.5.220/compiler/lib/intel64:/home/p_kumar/intel/composerxe-2011.5.220/mkl/lib/intel64:/home/p_kumar/intel/composerxe-2011.5.220/compiler/lib/ia32:/home/p_kumar/intel/composerxe-2011.5.220/compiler/lib/ia32:/home/p_kumar/intel/composerxe-2011.5.220/mkl/lib/ia32:/home/p_kumar/intel/composerxe-2011.5.220/compiler/lib/intel64:/home/p_kumar/intel/composerxe-2011.5.220/compiler/lib/intel64:/home/p_kumar/intel/composerxe-2011.5.220/mkl/lib/intel64:/home/p_kumar/intel/composerxe-2011.5.220/compiler/lib/ia32:/home/p_kumar/intel/composerxe-2011.5.220/compiler/lib/ia32:/home/p_kumar/intel/composerxe-2011.5.220/mkl/lib/ia32:/home/p_kumar/intel/composerxe-2011.5.220/mpirt/lib/ia32:/home/p_kumar/intel/composerxe-2011.5.220/mpirt/lib/intel64:/home/p_kumar/intel/composerxe-2011.5.220/mpirt/lib/ia32:/home/p_kumar/intel/composerxe-2011.5.220/mpirt/lib/intel64
>> > FFT_DEFINES = -DPUBFFT
>> > FFT_INCLUDE =
>> > FFT_LIBS =
>> > NETCDF_HOME =
>> > NETCDF_DEFINES =
>> > NETCDF_MOD =
>> > NETCDF_LIBS =
>> > MPI_HOME = /opt/mpich2/gnu
>> > MPI_DEFINES = -DMPI -DSLOW_NONBLOCKING_MPI
>> > MPI_INCLUDE = -I$(MPI_HOME)/include
>> > MPI_LIBDIR = $(MPI_HOME)/lib
>> > MPI_LIBS =
>> > DIRFRC_DEFINES = -DDIRFRC_EFS -DDIRFRC_NOVEC
>> > CPP = /lib/cpp
>> > CPPFLAGS = -traditional -P
>> > F90_DEFINES = -DFFTLOADBAL_2PROC
>> >
>> > F90 = mpif90
>> > MODULE_SUFFIX = mod
>> > F90FLAGS = -c -auto
>> > F90_OPT_DBG = -g -traceback
>> > F90_OPT_LO = -O0
>> > F90_OPT_MED = -O2
>> > F90_OPT_HI = -xW -ip -O3
>> > CC = gcc
>> > CFLAGS =
>> >
>> > LOAD = mpif90
>> > LOADFLAGS =
>> > LOADLIBS = -limf -lsvml -Wl,-rpath=$(IFORT_RPATH)
>> >
>> > Error Message
>> >
>> >
>> /home/p_kumar/intel/composerxe-2011.5.220/compiler/lib/intel64/libsvml.so:
>> > undefined reference to `__intel_cpu_indicator_init'
>> >
>> /home/p_kumar/intel/composerxe-2011.5.220/compiler/lib/intel64/libsvml.so:
>> > undefined reference to `__intel_cpu_indicator'
>> > collect2: ld returned 1 exit status
>> > make[1]: *** [pmemd] Error 1
>> > make[1]: Leaving directory `/home/p_kumar/amber10/src/pmemd/src'
>> > make: *** [all] Error 2
>> >
>> >
>> > On Mon, Aug 8, 2011 at 5:45 PM, David A Case <case.biomaps.rutgers.edu
>> >wrote:
>> >
>> >> On Mon, Aug 08, 2011, hari krishna wrote:
>> >>>
>> >>> *./configure linux64_opteron gfortran mpi pubfft bintraj *
>> >>
>> >> This looks like a very old version of Amber; what version is it?
>> >>
>> >>> ---
>> >>> *make *
>> >>>
>> >>> *end module gbl_constants_mod
>> >>> gbl_constants.f90
>> >>> make[1]: gbl_constants.f90: Command not found
>> >>
>> >> We need more details of the error message. Also, does sander compile
>> >> correctly? It's probably also good to post the config.h file that is
>> >> created
>> >> by configure.
>> >>
>> >> ...dac
>> >>
>> >>
>> >> _______________________________________________
>> >> AMBER mailing list
>> >> AMBER.ambermd.org
>> >> http://lists.ambermd.org/mailman/listinfo/amber
>> >>
>> > _______________________________________________
>> > AMBER mailing list
>> > AMBER.ambermd.org
>> > http://lists.ambermd.org/mailman/listinfo/amber
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Aug 08 2011 - 07:00:03 PDT
