Re: [AMBER] MD stop but this job in cluster still run

From: Ross Walker <ross.rosswalker.co.uk>
Date: Wed, 3 Aug 2011 11:26:54 -0700

> > | INFO: Old style inpcrd file read

This line concerns me though.

Looks like the code has misinterpreted your restart file. Chances are your
restart file is probably corrupt and is causing issues. Take a look at it
and see if there are any *'s in the file. Since you do not have iwrap
specified this is my guess at what is going wrong.

Then go back to the previous good restart file and run from there onwards
setting iwrap=1 in your input file and all should be good.

All the best
Ross

/\
\/
|\oss Walker

---------------------------------------------------------
| Assistant Research Professor |
| San Diego Supercomputer Center |
| Adjunct Assistant Professor |
| Dept. of Chemistry and Biochemistry |
| University of California San Diego |
| NVIDIA Fellow |
| http://www.rosswalker.co.uk | http://www.wmd-lab.org/ |
| Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
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Received on Wed Aug 03 2011 - 11:30:04 PDT
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