Try using AmberTools 1.5 instead, since it is much newer and may have solved
some of your problems.
On Mon, Aug 8, 2011 at 4:37 PM, manikanthan bhavaraju <
manikanthanbhavaraju.gmail.com> wrote:
> Hi All,
> I am trying to prepare prmtop and inpcrd files for uncomplex DNA-22mer
> using
> xleap of amber10. I have downloaded the pdb file from the protein data
> bank
> and made required modification. Still xleap is unable to save the files, as
> it is complaining about the atom type. Attached is the modified pdb
> file. I never handled DNA stuff with amber any suggestions.
>
>
> mani
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Aug 08 2011 - 14:30:02 PDT
