Dear Amber users,
We have installed Amber11 and AmberTools in the server. And I can run the examples of tutorial well. However, when I ran sander parallel by putting "mpirun -np 4" in the beginning of the command, the time to finish the job is the same as using single cpu.
I have attached the files by testing parallel version of Amber following page 13 of "Amber11 Users' Manual". How can I solve this problem so that I can run sander parallel? Thank you in advance.
Aimin
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Received on Mon Aug 01 2011 - 11:30:03 PDT
