Amber Archive Oct 2015: by author

Abelak, Kavin
- [AMBER] missingdisulfide (Tue Oct 27 2015 - 11:51:43 PDT)
- [AMBER] Tutorial 3 section 1 (Tue Oct 20 2015 - 04:54:58 PDT)
- [AMBER] Cytochrome P450 with heme simulation (Fri Oct 09 2015 - 03:47:47 PDT)
Abhipriya K
- Re: [AMBER] Real-time hydrogen bond formation using VMD (Wed Oct 14 2015 - 00:55:56 PDT)
- [AMBER] Real-time hydrogen bond formation using VMD (Tue Oct 13 2015 - 23:21:52 PDT)
Adam Winiarski
- [AMBER] Help - buy the Amber software (Tue Oct 27 2015 - 04:01:13 PDT)
Adrian Roitberg
- Re: [AMBER] small energy jump when restoring a simulation production (Tue Oct 27 2015 - 09:02:32 PDT)
- Re: [AMBER] QM/MM Umbrella (Tue Oct 27 2015 - 05:30:54 PDT)
- Re: [AMBER] paramfit multiple dihedral commbination (Mon Oct 26 2015 - 11:50:02 PDT)
- Re: [AMBER] Stopping sander in production phase. Why? (Fri Oct 23 2015 - 07:13:24 PDT)
- Re: [AMBER] QM/MM Umbrella (Fri Oct 23 2015 - 06:39:38 PDT)
- Re: [AMBER] Time correlation function of an atom (Thu Oct 22 2015 - 08:56:00 PDT)
- Re: [AMBER] Correctly deriving force constants for Amber (Thu Oct 15 2015 - 11:53:02 PDT)
- Re: [AMBER] CpHMD for non protein residues (Sun Oct 04 2015 - 16:34:35 PDT)
Alan
- Re: [AMBER] Charmm to Amber (where’s chamber?) (Fri Oct 30 2015 - 08:02:46 PDT)
- Re: [AMBER] Charmm to Amber (where’s chamber?) (Thu Oct 29 2015 - 16:21:51 PDT)
- Re: [AMBER] Charmm to Amber (where’s chamber?) (Wed Oct 28 2015 - 04:27:37 PDT)
- [AMBER] Charmm to Amber (where’s chamber?) (Wed Oct 28 2015 - 02:32:32 PDT)
- Re: [AMBER] AmberTools 15, Mac El Captain and Fink (Tue Oct 27 2015 - 03:29:15 PDT)
- Re: [AMBER] AmberTools 15, Mac El Captain and Fink (Mon Oct 26 2015 - 16:24:48 PDT)
- [AMBER] AmberTools 15, Mac El Captain and Fink (Mon Oct 26 2015 - 16:03:33 PDT)
Aleksandra Skoric
- Re: [AMBER] ALA but must be GLY MM-PBSA (Sun Oct 25 2015 - 11:26:57 PDT)
amin.imtech.res.in
- Re: [AMBER] Real-time hydrogen bond formation using VMD (Wed Oct 14 2015 - 01:47:38 PDT)
Andrew Bostick
- [AMBER] unusual structure_after equilibration (Tue Oct 27 2015 - 05:44:43 PDT)
Anitha Jagadesh
- [AMBER] Temperature fluctuations in stage heating (Mon Oct 12 2015 - 22:06:26 PDT)
anu chandra
- [AMBER] cpptraj uses huge memory space while doing molsurf calculation (Wed Oct 28 2015 - 05:48:40 PDT)
- [AMBER] Best suitable 'igb' value for MMPBSA.py calculation (Fri Oct 23 2015 - 07:02:25 PDT)
- Re: [AMBER] CPPTRAJ : different RMSD calculation in a single run (Fri Oct 16 2015 - 06:29:25 PDT)
- [AMBER] CPPTRAJ : different RMSD calculation in a single run (Fri Oct 16 2015 - 05:02:10 PDT)
- [AMBER] A question about MMPBSA calculation (Mon Oct 12 2015 - 09:14:08 PDT)
Arjun Sharma
- Re: [AMBER] AMBER Digest, Vol 1364, Issue 1 (Fri Oct 09 2015 - 07:02:14 PDT)
- [AMBER] cpin file (Tue Oct 06 2015 - 07:16:33 PDT)
Atila Petrosian
- Re: [AMBER] Stopping sander in production phase. Why? (Fri Oct 23 2015 - 08:48:54 PDT)
- Re: [AMBER] Stopping sander in production phase. Why? (Fri Oct 23 2015 - 08:12:31 PDT)
- Re: [AMBER] Stopping sander in production phase. Why? (Fri Oct 23 2015 - 07:10:24 PDT)
- [AMBER] Stopping sander in production phase. Why? (Fri Oct 23 2015 - 06:40:41 PDT)
- [AMBER] Info: Bond types are assigned for valence state 5 with penalty of 1 (Mon Oct 05 2015 - 13:57:53 PDT)
- [AMBER] /share/apps/amber/amber14/bin/sander.MPI: error while loading shared libraries: libmpi_cxx.so.1: cannot open shared object file: No such file or directory (Thu Oct 01 2015 - 01:34:23 PDT)
Ayesha Kanwal
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Wed Oct 14 2015 - 11:35:47 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Wed Oct 14 2015 - 02:12:48 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Tue Oct 13 2015 - 13:04:28 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Mon Oct 12 2015 - 20:59:56 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Mon Oct 12 2015 - 07:55:35 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Mon Oct 12 2015 - 06:48:32 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Sun Oct 11 2015 - 07:30:18 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Sun Oct 11 2015 - 07:23:49 PDT)
Balajee Ramachandran
- [AMBER] Help (Fri Oct 16 2015 - 12:55:26 PDT)
Batuhan Kav
- [AMBER] Different Parameters for Nonbonded Interactions (Wed Oct 28 2015 - 08:02:08 PDT)
Ben Roberts
- Re: [AMBER] How do you place two molecules in one water box? (Mon Oct 12 2015 - 12:13:53 PDT)
- Re: [AMBER] How do you place two molecules in one water box? (Mon Oct 12 2015 - 11:45:22 PDT)
bharat lakhani
- [AMBER] ALA but must be GLY MM-PBSA (Sun Oct 25 2015 - 08:46:42 PDT)
bijyalaxmi athokpam
- [AMBER] Fwd: EVB related query (Thu Oct 15 2015 - 04:39:50 PDT)
- [AMBER] EVB related query (Wed Oct 14 2015 - 01:54:26 PDT)
Bill Ross
- Re: [AMBER] TIP3 water not recognized (Fri Oct 02 2015 - 18:04:57 PDT)
- Re: [AMBER] problem with randomizing velocities (Fri Oct 02 2015 - 14:12:11 PDT)
- Re: [AMBER] problem with randomizing velocities (Fri Oct 02 2015 - 14:05:39 PDT)
Björn Karlsson
- [AMBER] cpptraj density (Tue Oct 13 2015 - 11:10:54 PDT)
Brent Krueger
- Re: [AMBER] query about Bromide ion forcefield parameter (Fri Oct 16 2015 - 05:59:04 PDT)
- Re: [AMBER] Problem with VDW energy (Fri Oct 02 2015 - 11:33:14 PDT)
- [AMBER] Problem with VDW energy (Fri Oct 02 2015 - 10:54:07 PDT)
Brian Radak
- Re: [AMBER] QMMM with inorganic molecules (Tue Oct 27 2015 - 10:31:45 PDT)
- Re: [AMBER] QM/MM Umbrella (Tue Oct 27 2015 - 07:00:58 PDT)
- Re: [AMBER] CpHMD for non protein residues (Mon Oct 05 2015 - 06:57:03 PDT)
Carlos Modenutti
- Re: [AMBER] Metal Ion Model (Fri Oct 30 2015 - 12:06:42 PDT)
- [AMBER] Metal Ion Model (Thu Oct 22 2015 - 15:42:05 PDT)
Carlos Simmerling
- Re: [AMBER] [AMEBR] Amino acid side-chain carbonyl C=O(ASP, GLU) and side-cahin -HN (LYS, ARG) close proximity (Fri Oct 30 2015 - 04:05:32 PDT)
- Re: [AMBER] small energy jump when restoring a simulation production (Tue Oct 27 2015 - 10:04:47 PDT)
- Re: [AMBER] small energy jump when restoring a simulation production (Tue Oct 27 2015 - 06:56:44 PDT)
- Re: [AMBER] unusual structure_after equilibration (Tue Oct 27 2015 - 06:19:18 PDT)
- Re: [AMBER] Resulting cutoff is too small for your lower limit (Tue Oct 27 2015 - 06:18:18 PDT)
- Re: [AMBER] paramfit multiple dihedral commbination (Mon Oct 26 2015 - 12:32:35 PDT)
- Re: [AMBER] Best suitable 'igb' value for MMPBSA.py calculation (Fri Oct 23 2015 - 12:02:16 PDT)
- Re: [AMBER] ff12SB vs ff14SB for protein-ligand MD simulations? (Wed Oct 21 2015 - 18:16:48 PDT)
- Re: [AMBER] Help (Fri Oct 16 2015 - 13:01:53 PDT)
- Re: [AMBER] non-standard residue (DNA-protein crosslink) (Fri Oct 09 2015 - 09:41:17 PDT)
- Re: [AMBER] Pairwise energy decomposition (Tue Oct 06 2015 - 03:39:08 PDT)
case
- Re: [AMBER] Tutorial 22 - aMD - how long should it last on Titan Black? (Thu Oct 29 2015 - 04:40:17 PDT)
- Re: [AMBER] Resulting cutoff is too small for your lower limit (Tue Oct 27 2015 - 10:27:30 PDT)
- Re: [AMBER] Leap PDB Input Error (Fri Oct 16 2015 - 18:18:23 PDT)
- Re: [AMBER] FW: System gets unwrap while iwrap=1 in ti (Thu Oct 15 2015 - 18:55:57 PDT)
- Re: [AMBER] many atoms, same name (Tue Oct 13 2015 - 18:29:33 PDT)
CHAMI F.
- [AMBER] paramfit multiple dihedral commbination (Mon Oct 26 2015 - 11:47:17 PDT)
- [AMBER] paramfit multiple dihedrals combination (Mon Oct 26 2015 - 10:53:57 PDT)
Charles Lin
- Re: [AMBER] compatibility of targeted MD with GPU amber vs. sander (Fri Oct 23 2015 - 15:18:16 PDT)
Chitrak Gupta
- Re: [AMBER] AMBER Digest, Vol 1361, Issue 1 (Sun Oct 04 2015 - 11:00:49 PDT)
- [AMBER] TIP3 water not recognized (Fri Oct 02 2015 - 16:03:35 PDT)
Christina Bergonzo
- Re: [AMBER] Measuring minimum distance between protein and graphene surface (Tue Oct 20 2015 - 12:26:54 PDT)
Christina Berti
- [AMBER] applying restraints using tinker (Wed Oct 28 2015 - 10:51:16 PDT)
- Re: [AMBER] Updates for PBSA energy calculations (Thu Oct 01 2015 - 12:29:03 PDT)
Claire Coderch Boué
- [AMBER] aMD: Bad data for namelist object ethreshp (Fri Oct 23 2015 - 09:29:56 PDT)
conor parks
- Re: [AMBER] What is the formula for calculating EPtot? (Thu Oct 15 2015 - 10:05:53 PDT)
- Re: [AMBER] What is the formula for calculating EPtot? (Thu Oct 15 2015 - 08:15:16 PDT)
- Re: [AMBER] What is the formula for calculating EPtot? (Thu Oct 15 2015 - 07:17:30 PDT)
- [AMBER] Dihedral/improper coefficient in AMBER + rmin vs sigma for lennard jones (Wed Oct 07 2015 - 21:33:05 PDT)
- Re: [AMBER] mixing rules for various water models in AMBER (Sun Oct 04 2015 - 09:30:31 PDT)
- Re: [AMBER] mixing rules for various water models in AMBER (Sat Oct 03 2015 - 23:32:58 PDT)
- [AMBER] mixing rules for various water models in AMBER (Sat Oct 03 2015 - 21:14:26 PDT)
Daniel Roe
- Re: [AMBER] Can't install AMBER14: MissingProgram...Install patch from your package manager (Sat Oct 31 2015 - 16:33:31 PDT)
- Re: [AMBER] cpptraj uses huge memory space while doing molsurf calculation (Thu Oct 29 2015 - 11:46:58 PDT)
- Re: [AMBER] how to convert mdcrd to NetCDF trajectory file? (Thu Oct 29 2015 - 07:52:50 PDT)
- Re: [AMBER] atomiccorr (Thu Oct 29 2015 - 07:49:16 PDT)
- Re: [AMBER] how to generate a model beta-sheet structure (Thu Oct 29 2015 - 07:34:25 PDT)
- Re: [AMBER] cpptraj - bridging water (Tue Oct 27 2015 - 07:25:12 PDT)
- Re: [AMBER] ante-MMPBSA question (Tue Oct 27 2015 - 07:22:53 PDT)
- Re: [AMBER] Membrane protein imagining problems (Mon Oct 19 2015 - 12:43:01 PDT)
- Re: [AMBER] [cpptraj] Changes in RMSF functionality? (Mon Oct 19 2015 - 10:10:36 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 11:39:58 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 10:43:58 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 08:22:57 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 07:42:44 PDT)
- Re: [AMBER] sander missing from AmberTools15? (Fri Oct 16 2015 - 14:13:46 PDT)
- Re: [AMBER] sander missing from AmberTools15? (Fri Oct 16 2015 - 13:34:28 PDT)
- Re: [AMBER] What is the formula for calculating EPtot? (Thu Oct 15 2015 - 07:31:05 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Mon Oct 12 2015 - 07:34:21 PDT)
- Re: [AMBER] h-bond calculation - tokenise error (Fri Oct 09 2015 - 08:14:01 PDT)
- Re: [AMBER] Controlling size of the box (Fri Oct 09 2015 - 02:51:39 PDT)
- Re: [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Wed Oct 07 2015 - 20:58:40 PDT)
- Re: [AMBER] Atom 1512 was assigned a lower molecule # than previous atom (Mon Oct 05 2015 - 12:36:32 PDT)
- Re: [AMBER] Atom 1512 was assigned a lower molecule # than previous atom (Mon Oct 05 2015 - 12:09:12 PDT)
- Re: [AMBER] Question about mask in cpptraj (Mon Oct 05 2015 - 06:02:09 PDT)
- Re: [AMBER] Question about mask in cpptraj (Sun Oct 04 2015 - 20:53:52 PDT)
- Re: [AMBER] Units of the dipole moment? (Thu Oct 01 2015 - 11:51:06 PDT)
David A Case
- Re: [AMBER] Charmm to Amber (where’s chamber?) (Wed Oct 28 2015 - 05:25:16 PDT)
- Re: [AMBER] Steps after: AMBER annealing with restriaints in vocuum.? towards improving the quality of structure with out RDC, Dihedrals (Sat Oct 24 2015 - 05:34:53 PDT)
- Re: [AMBER] aMD: Bad data for namelist object ethreshp (Sat Oct 24 2015 - 05:28:39 PDT)
- Re: [AMBER] Time correlation function of an atom (Thu Oct 22 2015 - 15:30:19 PDT)
- Re: [AMBER] How can amber differentiate between terminal Oxygens (Thu Oct 22 2015 - 15:21:08 PDT)
- Re: [AMBER] Problem configuring amber14 (Wed Oct 21 2015 - 12:58:05 PDT)
- Re: [AMBER] Problems with the installation of ambertools15. (Tue Oct 20 2015 - 04:51:49 PDT)
- Re: [AMBER] Why is water box getting bigger? (Mon Oct 19 2015 - 06:16:16 PDT)
- Re: [AMBER] sander missing from AmberTools15? (Fri Oct 16 2015 - 12:55:03 PDT)
- Re: [AMBER] AmberTools14 configuration problem (Fri Oct 16 2015 - 11:00:32 PDT)
- Re: [AMBER] Documentation on Prepin File Format (Fri Oct 16 2015 - 10:50:53 PDT)
- Re: [AMBER] tinker_to_amber does not work (Fri Oct 16 2015 - 08:49:31 PDT)
- Re: [AMBER] RESP charge calculation (Thu Oct 15 2015 - 13:10:03 PDT)
- Re: [AMBER] Is it possible to simulate a periodic crystal ? (Thu Oct 15 2015 - 10:20:38 PDT)
- Re: [AMBER] Correctly deriving force constants for Amber (Thu Oct 15 2015 - 09:35:33 PDT)
- Re: [AMBER] problem with randomizing velocities (Thu Oct 15 2015 - 09:30:54 PDT)
- Re: [AMBER] What is the formula for calculating EPtot? (Thu Oct 15 2015 - 05:42:08 PDT)
- Re: [AMBER] difficulties in generate .prmtop and .inpcrd file for complex using Guassian calculated ligand charges (Thu Oct 15 2015 - 05:35:46 PDT)
- Re: [AMBER] cutoff problem with a periodic crystal box (Thu Oct 15 2015 - 05:33:22 PDT)
- Re: [AMBER] EVB related query (Thu Oct 15 2015 - 05:13:18 PDT)
- Re: [AMBER] Ho Atom Inclusion in PDB from Leap (Wed Oct 14 2015 - 13:26:27 PDT)
- Re: [AMBER] query about Bromide ion forcefield parameter (Mon Oct 12 2015 - 05:47:36 PDT)
- Re: [AMBER] Prepgen difficulty (Mon Oct 12 2015 - 05:45:52 PDT)
- Re: [AMBER] Making Parameter and Topology Files for Protein-Ligand Complex (Sat Oct 10 2015 - 07:04:12 PDT)
- Re: [AMBER] "Vlimit exceeded for step..." error (Sat Oct 10 2015 - 06:56:32 PDT)
- Re: [AMBER] Restraints (Fri Oct 09 2015 - 06:03:49 PDT)
- Re: [AMBER] "Vlimit exceeded for step..." error (Thu Oct 08 2015 - 14:37:33 PDT)
- Re: [AMBER] Controlling size of the box (Thu Oct 08 2015 - 09:41:00 PDT)
- Re: [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Wed Oct 07 2015 - 20:06:33 PDT)
- Re: [AMBER] Info: Bond types are assigned for valence state 5 with penalty of 1 (Mon Oct 05 2015 - 19:44:39 PDT)
- Re: [AMBER] Leap : problem with copying and combining DNA items (Mon Oct 05 2015 - 14:01:29 PDT)
- Re: [AMBER-Developers] [AMBER] problem with randomizing velocities (Sun Oct 04 2015 - 23:17:15 PDT)
- Re: [AMBER] QM/MM performance (Sun Oct 04 2015 - 11:13:28 PDT)
- Re: [AMBER] Problem with VDW energy (Fri Oct 02 2015 - 11:30:42 PDT)
David Case
- Re: [AMBER] Query about adding hydrogens (Sat Oct 24 2015 - 07:31:03 PDT)
David Eugene Jones
- Re: [AMBER] How do you place two molecules in one water box? (Mon Oct 12 2015 - 12:22:44 PDT)
- Re: [AMBER] How do you place two molecules in one water box? (Mon Oct 12 2015 - 12:02:17 PDT)
- [AMBER] How do you place two molecules in one water box? (Mon Oct 12 2015 - 11:28:54 PDT)
Dr. Anselm Horn
- Re: [AMBER] N- and C- terminals constant PH simulation (Fri Oct 30 2015 - 05:10:46 PDT)
Dwight McGee
- Re: [AMBER] MMPBSA: multiple trajectory approach usage (Wed Oct 21 2015 - 09:31:49 PDT)
- Re: [AMBER] MMPBSA: multiple trajectory approach usage (Wed Oct 21 2015 - 08:53:41 PDT)
Ebert Maximilian
- Re: [AMBER] Oxygen parameters for AMBER99SB-ILDN (Mon Oct 26 2015 - 07:05:52 PDT)
- [AMBER] Lennard-Jones parameter for Sp, Sp2 and Sp3 Nitrogen (Mon Oct 19 2015 - 14:37:43 PDT)
Elisa Frezza
- [AMBER] AIB parameter (Fri Oct 09 2015 - 04:56:06 PDT)
Emilio Lence
- Re: [AMBER] QM/MM Umbrella (Tue Oct 27 2015 - 09:11:39 PDT)
- [AMBER] Fwd: donor and acceptor masks (Sat Oct 17 2015 - 07:51:36 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 07:43:57 PDT)
- Re: [AMBER] difficulties in generate .prmtop and .inpcrd file (Sat Oct 17 2015 - 07:40:27 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 07:23:24 PDT)
- Re: [AMBER] difficulties in generate .prmtop and .inpcrd file for complex using Guassian calculated ligand charges (Thu Oct 15 2015 - 02:02:20 PDT)
- Re: [AMBER] Minimization (Wed Oct 14 2015 - 03:38:06 PDT)
- Re: [AMBER] difficulties in generate .prmtop and .inpcrd file for complex using Guassian calculated ligand charges (Wed Oct 14 2015 - 03:31:53 PDT)
- Re: [AMBER] http://q4md-forcefieldtools.org/ unavailable (Mon Oct 12 2015 - 01:06:07 PDT)
- Re: [AMBER] Making Parameter and Topology Files for Protein-Ligand Complex (Sat Oct 10 2015 - 04:09:04 PDT)
- Re: [AMBER] Restraints (Fri Oct 09 2015 - 05:41:08 PDT)
- Re: [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Thu Oct 08 2015 - 01:07:06 PDT)
- Re: [AMBER] How to do a QMMM calculation with a dynamic QM region (Wed Oct 07 2015 - 02:55:20 PDT)
- Re: [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Tue Oct 06 2015 - 04:54:31 PDT)
- Re: [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Mon Oct 05 2015 - 03:26:03 PDT)
- [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Fri Oct 02 2015 - 11:11:03 PDT)
- Re: [AMBER] QMMM SCC-DFTB: ERROR ON EWEVGE in AMBER 12 using the new set 3ob-3-1 (Thu Oct 01 2015 - 07:22:46 PDT)
- [AMBER] QMMM SCC-DFTB: ERROR ON EWEVGE in AMBER 12 using the new set 3ob-3-1 (Thu Oct 01 2015 - 05:47:07 PDT)
Fabian Glaser
- Re: [AMBER] small energy jump when restoring a simulation production (Tue Oct 27 2015 - 11:35:53 PDT)
Fabian gmail
- Re: [AMBER] MMPBSA for multiple mutants (Thu Oct 29 2015 - 08:35:18 PDT)
- [AMBER] MMPBSA for multiple mutants (Thu Oct 29 2015 - 08:27:58 PDT)
- Re: [AMBER] small energy jump when restoring a simulation production (Tue Oct 27 2015 - 10:02:08 PDT)
- Re: [AMBER] small energy jump when restoring a simulation production (Tue Oct 27 2015 - 09:42:13 PDT)
- Re: [AMBER] small energy jump when restoring a simulation production (Tue Oct 27 2015 - 09:10:44 PDT)
- Re: [AMBER] small energy jump when restoring a simulation production (Tue Oct 27 2015 - 07:03:19 PDT)
- [AMBER] small energy jump when restoring a simulation production (Tue Oct 27 2015 - 06:36:05 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Thu Oct 22 2015 - 06:17:19 PDT)
- [AMBER] MMPBSA for peptides interaction (Thu Oct 22 2015 - 06:16:22 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Thu Oct 22 2015 - 03:51:06 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Thu Oct 22 2015 - 03:38:16 PDT)
- Re: [AMBER] Problem configuring amber14 (Thu Oct 22 2015 - 03:18:43 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Thu Oct 22 2015 - 03:11:06 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Tue Oct 20 2015 - 07:08:16 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Tue Oct 20 2015 - 05:41:24 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Tue Oct 20 2015 - 05:20:00 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Tue Oct 20 2015 - 03:19:47 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Mon Oct 19 2015 - 08:34:35 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Mon Oct 19 2015 - 07:26:33 PDT)
- [AMBER] MMPBSA tutorial A3.2 (Mon Oct 19 2015 - 07:17:02 PDT)
fjliu
- [AMBER] How to prevent the water molecules entering into the binding pocket during the MD simulation ? (Thu Oct 29 2015 - 23:20:57 PDT)
Francesco Pietra
- [AMBER] Parameters for trigonal bi-pyramid and square bi-pyramid Fe(II) (Thu Oct 01 2015 - 08:17:33 PDT)
George Tzotzos
- Re: [AMBER] MMPBSA: multiple trajectory approach usage (Wed Oct 21 2015 - 09:38:01 PDT)
- Re: [AMBER] MMPBSA: multiple trajectory approach usage (Wed Oct 21 2015 - 09:10:54 PDT)
- [AMBER] MMPBSA: multiple trajectory approach usage (Wed Oct 21 2015 - 08:19:44 PDT)
Gerald Monard
- Re: [AMBER] &rst + distance + coordinate restraint (Sat Oct 31 2015 - 10:21:50 PDT)
- [AMBER] &rst + distance + coordinate restraint (Sat Oct 31 2015 - 10:02:00 PDT)
Guqin Shi
- Re: [AMBER] Random Number Generator Flag Ig (Fri Oct 16 2015 - 12:34:09 PDT)
- Re: [AMBER] Random Number Generator Flag Ig (Fri Oct 16 2015 - 09:48:37 PDT)
- [AMBER] Random Number Generator Flag Ig (Fri Oct 16 2015 - 09:17:34 PDT)
- [AMBER] Random Number Generator Flag Ig (Fri Oct 16 2015 - 09:13:35 PDT)
Gustavo Seabra
- Re: [AMBER] ions cannot be viewed in gaussview (Sat Oct 31 2015 - 10:53:32 PDT)
- Re: [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Wed Oct 07 2015 - 19:16:13 PDT)
- Re: [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Mon Oct 05 2015 - 13:17:11 PDT)
- Re: [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Mon Oct 05 2015 - 06:03:04 PDT)
- Re: [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Fri Oct 02 2015 - 12:51:29 PDT)
- Re: [AMBER] QMMM SCC-DFTB: ERROR ON EWEVGE in AMBER 12 using the new set 3ob-3-1 (Thu Oct 01 2015 - 06:43:22 PDT)
Hadeer ELHabashy
- Re: [AMBER] N- and C- terminals constant PH simulation (Fri Oct 30 2015 - 04:22:02 PDT)
- [AMBER] N- and C- terminals constant PH simulation (Tue Oct 27 2015 - 06:32:56 PDT)
- Re: [AMBER] How can amber differentiate between terminal Oxygens (Tue Oct 27 2015 - 03:58:55 PDT)
- [AMBER] coordination number (Tue Oct 27 2015 - 03:57:02 PDT)
- Re: [AMBER] How can amber differentiate between terminal Oxygens (Mon Oct 26 2015 - 07:29:04 PDT)
- Re: [AMBER] How can amber differentiate between terminal Oxygens (Mon Oct 26 2015 - 07:01:37 PDT)
- Re: [AMBER] How can amber differentiate between terminal Oxygens (Mon Oct 26 2015 - 06:37:50 PDT)
- Re: [AMBER] How can amber differentiate between terminal Oxygens (Mon Oct 26 2015 - 05:58:23 PDT)
- [AMBER] atomiccorr (Mon Oct 26 2015 - 04:43:47 PDT)
- Re: [AMBER] How can amber differentiate between terminal Oxygens (Mon Oct 26 2015 - 04:41:10 PDT)
- Re: [AMBER] Constant pH MD (Mon Oct 26 2015 - 01:11:40 PDT)
- [AMBER] Constant pH MD (Mon Oct 26 2015 - 01:07:05 PDT)
- Re: [AMBER] Time correlation function of an atom (Thu Oct 22 2015 - 09:06:07 PDT)
- [AMBER] Time correlation function of an atom (Thu Oct 22 2015 - 08:54:24 PDT)
- [AMBER] How can amber differentiate between terminal Oxygens (Thu Oct 22 2015 - 07:00:59 PDT)
- [AMBER] The magnitude and the direction of the electric field (Wed Oct 21 2015 - 05:54:48 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 10:57:16 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 09:56:21 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 09:34:54 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 09:09:43 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 08:22:18 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 08:20:36 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 08:14:27 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 08:05:49 PDT)
- [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 07:06:27 PDT)
- Re: [AMBER] cutoff problem with a periodic crystal box (Thu Oct 15 2015 - 05:08:53 PDT)
- [AMBER] cutoff problem with a periodic crystal box (Thu Oct 15 2015 - 00:26:43 PDT)
- Re: [AMBER] Is it possible to simulate a periodic crystal ? (Wed Oct 14 2015 - 11:38:17 PDT)
- Re: [AMBER] Is it possible to simulate a periodic crystal ? (Wed Oct 14 2015 - 11:23:29 PDT)
- Re: [AMBER] error with line 165 of cpinutil.py (Wed Oct 14 2015 - 07:07:09 PDT)
- [AMBER] Is it possible to simulate a periodic crystal ? (Wed Oct 14 2015 - 06:51:37 PDT)
- Re: [AMBER] error with line 165 of cpinutil.py (Wed Oct 14 2015 - 06:41:36 PDT)
- [AMBER] error with line 165 of cpinutil.py (Wed Oct 14 2015 - 03:34:04 PDT)
- [AMBER] many atoms, same name (Tue Oct 13 2015 - 11:08:08 PDT)
Hai Nguyen
- Re: [AMBER] AMBER14 testing error (Fri Oct 30 2015 - 11:56:49 PDT)
- Re: [AMBER] how to generate a model beta-sheet structure (Wed Oct 28 2015 - 10:22:14 PDT)
- Re: [AMBER] Best suitable 'igb' value for MMPBSA.py calculation (Fri Oct 23 2015 - 08:20:47 PDT)
- Re: [AMBER] Measuring distance between protein and graphene surface (Tue Oct 20 2015 - 11:09:41 PDT)
- Re: [AMBER] gromacs to amber file format (Tue Oct 20 2015 - 06:31:40 PDT)
- Re: [AMBER] Membrane protein imagining problems (Mon Oct 19 2015 - 12:59:07 PDT)
Hector A. Baldoni
- Re: [AMBER] RED-tools (Sun Oct 25 2015 - 19:33:37 PDT)
- Re: [AMBER] RED-tools (Fri Oct 23 2015 - 10:12:20 PDT)
- Re: [AMBER] RED-tools (Thu Oct 22 2015 - 15:29:09 PDT)
- Re: [AMBER] How to do a QMMM calculation with a dynamic QM region (Wed Oct 07 2015 - 04:05:53 PDT)
- Re: [AMBER] problem with randomizing velocities (Fri Oct 02 2015 - 21:14:09 PDT)
Ivanov, Maxim
- [AMBER] AmberTools14 configuration problem (Tue Oct 13 2015 - 14:25:14 PDT)
Jackle, Chasen
- [AMBER] non-standard residue (DNA-protein crosslink) (Fri Oct 09 2015 - 09:35:14 PDT)
Jagannath Mondal
- [AMBER] how to generate a model beta-sheet structure (Wed Oct 28 2015 - 10:13:18 PDT)
- Re: [AMBER] query about Bromide ion forcefield parameter (Thu Oct 15 2015 - 21:56:30 PDT)
- [AMBER] query about Bromide ion forcefield parameter (Mon Oct 12 2015 - 04:01:09 PDT)
Jason Swails
- Re: [AMBER] mmpbsa.py error (Sat Oct 31 2015 - 11:57:26 PDT)
- Re: [AMBER] ions cannot be viewed in gaussview (Sat Oct 31 2015 - 09:23:58 PDT)
- Re: [AMBER] AMBER14 testing error (Sat Oct 31 2015 - 08:47:11 PDT)
- Re: [AMBER] mmpbsa.py error (Fri Oct 30 2015 - 17:18:33 PDT)
- Re: [AMBER] Elementary VMD Problem with Amber Trajectory (Fri Oct 30 2015 - 14:45:54 PDT)
- Re: [AMBER] ions cannot be viewed in gaussview (Fri Oct 30 2015 - 08:50:02 PDT)
- Re: [AMBER] Charmm to Amber (where’s chamber?) (Fri Oct 30 2015 - 08:47:37 PDT)
- Re: [AMBER] Why PBSA decomposition takes so long time? (Fri Oct 30 2015 - 07:10:01 PDT)
- Re: [AMBER] Charmm to Amber (where’s chamber?) (Thu Oct 29 2015 - 18:40:39 PDT)
- Re: [AMBER] MMPBSA for multiple mutants (Thu Oct 29 2015 - 08:32:24 PDT)
- Re: [AMBER] Different Parameters for Nonbonded Interactions (Wed Oct 28 2015 - 18:49:09 PDT)
- Re: [AMBER] applying restraints using tinker (Wed Oct 28 2015 - 13:04:01 PDT)
- Re: [AMBER] Charmm to Amber (where’s chamber?) (Wed Oct 28 2015 - 07:08:05 PDT)
- Re: [AMBER] Replica exchange temperature distribution (Tue Oct 27 2015 - 20:07:53 PDT)
- Re: [AMBER] missingdisulfide (Tue Oct 27 2015 - 12:54:56 PDT)
- Re: [AMBER] small energy jump when restoring a simulation production (Tue Oct 27 2015 - 12:48:29 PDT)
- Re: [AMBER] small energy jump when restoring a simulation production (Tue Oct 27 2015 - 10:26:25 PDT)
- Re: [AMBER] small energy jump when restoring a simulation production (Tue Oct 27 2015 - 10:23:15 PDT)
- Re: [AMBER] small energy jump when restoring a simulation production (Tue Oct 27 2015 - 09:39:49 PDT)
- Re: [AMBER] small energy jump when restoring a simulation production (Tue Oct 27 2015 - 08:46:05 PDT)
- Re: [AMBER] ante-MMPBSA question (Tue Oct 27 2015 - 08:41:15 PDT)
- Re: [AMBER] N- and C- terminals constant PH simulation (Tue Oct 27 2015 - 08:34:02 PDT)
- Re: [AMBER] AmberTools 15, Mac El Captain and Fink (Mon Oct 26 2015 - 18:08:10 PDT)
- Re: [AMBER] AmberTools 15, Mac El Captain and Fink (Mon Oct 26 2015 - 18:02:23 PDT)
- Re: [AMBER] How can amber differentiate between terminal Oxygens (Mon Oct 26 2015 - 09:19:20 PDT)
- Re: [AMBER] How can amber differentiate between terminal Oxygens (Mon Oct 26 2015 - 07:21:35 PDT)
- Re: [AMBER] How can amber differentiate between terminal Oxygens (Mon Oct 26 2015 - 06:59:49 PDT)
- Re: [AMBER] How can amber differentiate between terminal Oxygens (Mon Oct 26 2015 - 06:09:50 PDT)
- Re: [AMBER] Why is water box getting bigger? (Mon Oct 26 2015 - 05:45:23 PDT)
- Re: [AMBER] How can amber differentiate between terminal Oxygens (Mon Oct 26 2015 - 05:37:20 PDT)
- Re: [AMBER] Stopping sander in production phase. Why? (Fri Oct 23 2015 - 09:01:26 PDT)
- Re: [AMBER] Stopping sander in production phase. Why? (Fri Oct 23 2015 - 08:24:06 PDT)
- Re: [AMBER] Best suitable 'igb' value for MMPBSA.py calculation (Fri Oct 23 2015 - 07:16:29 PDT)
- Re: [AMBER] Problem configuring amber14 (Fri Oct 23 2015 - 07:08:13 PDT)
- Re: [AMBER] Polardecomp in 3D-RISM fails (Thu Oct 22 2015 - 13:20:06 PDT)
- Re: [AMBER] RED-tools (Thu Oct 22 2015 - 13:17:14 PDT)
- Re: [AMBER] Why is water box getting bigger? (Thu Oct 22 2015 - 07:05:38 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Thu Oct 22 2015 - 06:14:20 PDT)
- Re: [AMBER] Problem configuring amber14 (Wed Oct 21 2015 - 12:38:34 PDT)
- Re: [AMBER] Why is water box getting bigger? (Wed Oct 21 2015 - 05:10:18 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Tue Oct 20 2015 - 10:59:05 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Tue Oct 20 2015 - 06:59:06 PDT)
- Re: [AMBER] gromacs to amber file format (Tue Oct 20 2015 - 06:52:23 PDT)
- Re: [AMBER] Differences on MMPBSA calculation results (Tue Oct 20 2015 - 06:46:28 PDT)
- Re: [AMBER] 1-4 nonbonded interactions does not cancel in MMPBSA calculation (Tue Oct 20 2015 - 06:42:19 PDT)
- Re: [AMBER] The formulas of per-residue and pairwise-residue free energy decomposition in mm_pbsa (Tue Oct 20 2015 - 06:40:15 PDT)
- Re: [AMBER] Differences on MMPBSA calculation results (Mon Oct 19 2015 - 08:25:46 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Mon Oct 19 2015 - 08:24:11 PDT)
- Re: [AMBER] AmberTools14 configuration problem (Sat Oct 17 2015 - 09:09:19 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 08:16:37 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 08:09:30 PDT)
- Re: [AMBER] sander missing from AmberTools15? (Fri Oct 16 2015 - 14:20:29 PDT)
- Re: [AMBER] sander missing from AmberTools15? (Fri Oct 16 2015 - 13:03:21 PDT)
- Re: [AMBER] Help (Fri Oct 16 2015 - 13:01:49 PDT)
- Re: [AMBER] CpHMD for non protein residues (Fri Oct 16 2015 - 12:58:09 PDT)
- Re: [AMBER] sander missing from AmberTools15? (Fri Oct 16 2015 - 12:56:58 PDT)
- Re: [AMBER] Random Number Generator Flag Ig (Fri Oct 16 2015 - 09:55:46 PDT)
- Re: [AMBER] Random Number Generator Flag Ig (Fri Oct 16 2015 - 09:49:57 PDT)
- Re: [AMBER] CPPTRAJ : different RMSD calculation in a single run (Fri Oct 16 2015 - 08:49:19 PDT)
- Re: [AMBER] CPPTRAJ : different RMSD calculation in a single run (Fri Oct 16 2015 - 05:19:01 PDT)
- Re: [AMBER] Documentation on Prepin File Format (Fri Oct 16 2015 - 05:13:55 PDT)
- Re: [AMBER] query about Bromide ion forcefield parameter (Fri Oct 16 2015 - 05:12:00 PDT)
- Re: [AMBER] CpHMD for non protein residues (Fri Oct 16 2015 - 04:57:55 PDT)
- Re: [AMBER] FW: System gets unwrap while iwrap=1 in ti (Fri Oct 16 2015 - 04:54:43 PDT)
- Re: [AMBER] Not atom type for Bromine atom in amber GAFF force field? (Thu Oct 15 2015 - 10:14:13 PDT)
- Re: [AMBER] What is the formula for calculating EPtot? (Thu Oct 15 2015 - 08:58:19 PDT)
- Re: [AMBER] What is the formula for calculating EPtot? (Thu Oct 15 2015 - 07:56:20 PDT)
- Re: [AMBER] tinker_to_amber does not work (Thu Oct 15 2015 - 07:54:04 PDT)
- Re: [AMBER] System gets unwrap while iwrap=1 in ti (Thu Oct 15 2015 - 07:14:58 PDT)
- Re: [AMBER] System gets unwrap while iwrap=1 in ti (Thu Oct 15 2015 - 06:32:54 PDT)
- Re: [AMBER] cutoff problem with a periodic crystal box (Thu Oct 15 2015 - 04:59:56 PDT)
- Re: [AMBER] What is the formula for calculating EPtot? (Thu Oct 15 2015 - 04:52:58 PDT)
- Re: [AMBER] tinker_to_amber does not work (Wed Oct 14 2015 - 18:09:23 PDT)
- Re: [AMBER] Is it possible to simulate a periodic crystal ? (Wed Oct 14 2015 - 07:05:45 PDT)
- Re: [AMBER] error with line 165 of cpinutil.py (Wed Oct 14 2015 - 07:04:22 PDT)
- Re: [AMBER] error with line 165 of cpinutil.py (Wed Oct 14 2015 - 05:47:33 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Wed Oct 14 2015 - 05:44:19 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Tue Oct 13 2015 - 14:06:10 PDT)
- Re: [AMBER] many atoms, same name (Tue Oct 13 2015 - 11:34:17 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Tue Oct 13 2015 - 04:47:53 PDT)
- Re: [AMBER] A question about MMPBSA calculation (Mon Oct 12 2015 - 09:59:41 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Mon Oct 12 2015 - 08:12:35 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Sun Oct 11 2015 - 08:28:47 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Sun Oct 11 2015 - 08:26:18 PDT)
- Re: [AMBER] resp input format 16I5 (Fri Oct 09 2015 - 08:22:31 PDT)
- Re: [AMBER] AMBER Digest, Vol 1364, Issue 1 (Fri Oct 09 2015 - 07:49:12 PDT)
- Re: [AMBER] Restraints (Fri Oct 09 2015 - 06:41:37 PDT)
- Re: [AMBER] Restraints (Fri Oct 09 2015 - 06:23:09 PDT)
- Re: [AMBER] Restraints (Fri Oct 09 2015 - 06:20:37 PDT)
- Re: [AMBER] Cytochrome P450 with heme simulation (Fri Oct 09 2015 - 06:18:31 PDT)
- Re: [AMBER] Controlling size of the box (Thu Oct 08 2015 - 09:50:01 PDT)
- Re: [AMBER] Controlling size of the box (Thu Oct 08 2015 - 08:51:57 PDT)
- Re: [AMBER] Dihedral/improper coefficient in AMBER + rmin vs sigma for lennard jones (Thu Oct 08 2015 - 05:14:15 PDT)
- Re: [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Thu Oct 08 2015 - 04:48:45 PDT)
- Re: [AMBER] cpin file (Tue Oct 06 2015 - 09:14:09 PDT)
- Re: [AMBER] CpHMD for non protein residues (Sun Oct 04 2015 - 19:01:24 PDT)
- Re: [AMBER] AMBER Digest, Vol 1361, Issue 1 (Sun Oct 04 2015 - 13:33:28 PDT)
- Re: [AMBER] mixing rules for various water models in AMBER (Sun Oct 04 2015 - 10:38:18 PDT)
- Re: [AMBER] mixing rules for various water models in AMBER (Sun Oct 04 2015 - 07:31:45 PDT)
- Re: [AMBER] mixing rules for various water models in AMBER (Sat Oct 03 2015 - 22:27:28 PDT)
- Re: [AMBER] Updates for PBSA energy calculations (Thu Oct 01 2015 - 13:13:28 PDT)
jfliu
- [AMBER] Resulting cutoff is too small for your lower limit (Tue Oct 27 2015 - 05:58:22 PDT)
Jim Wu
- [AMBER] Making Parameter and Topology Files for Protein-Ligand Complex (Fri Oct 09 2015 - 16:14:09 PDT)
Jin Zhang
- [AMBER] difficulties in generate .prmtop and .inpcrd file for complex using Guassian calculated ligand charges (Wed Oct 14 2015 - 02:20:36 PDT)
Jinfeng Huang
- [AMBER] Problems with the installation of ambertools15. (Mon Oct 19 2015 - 20:33:15 PDT)
jixiaofeng
- [AMBER] parameters for Boron (Tue Oct 27 2015 - 00:36:09 PDT)
Jonathan Sheehan
- Re: [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Wed Oct 07 2015 - 23:28:11 PDT)
- Re: [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Wed Oct 07 2015 - 13:41:46 PDT)
- Re: [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Mon Oct 05 2015 - 12:02:24 PDT)
- Re: [AMBER] ^.^. as a new atom type when running DFTB with sander from Ambertools 15 (Mon Oct 05 2015 - 11:28:04 PDT)
Jose Borreguero
- [AMBER] Can't install AMBER14: MissingProgram...Install patch from your package manager (Sat Oct 31 2015 - 15:54:06 PDT)
Josep Maria Campanera Alsina
- Re: [AMBER] Polardecomp in 3D-RISM fails (Tue Oct 27 2015 - 05:29:47 PDT)
- [AMBER] Polardecomp in 3D-RISM fails (Thu Oct 22 2015 - 12:33:43 PDT)
Juan Eiros Zamora
- [AMBER] [cpptraj] Changes in RMSF functionality? (Mon Oct 19 2015 - 09:30:48 PDT)
- Re: [AMBER] error with line 165 of cpinutil.py (Wed Oct 14 2015 - 07:01:23 PDT)
Jérémie Knoops
- [AMBER] (too) high absolute values for charges using resp and gaussian (Tue Oct 27 2015 - 01:38:47 PDT)
- [AMBER] SGLDg (Tue Oct 20 2015 - 22:45:23 PDT)
- Re: [AMBER] 1-4 nonbonded interactions does not cancel in MMPBSA calculation (Tue Oct 20 2015 - 00:48:32 PDT)
- [AMBER] http://q4md-forcefieldtools.org/ unavailable (Fri Oct 09 2015 - 04:59:54 PDT)
- Re: [AMBER] Leap : problem with copying and combining DNA items (Mon Oct 05 2015 - 05:34:14 PDT)
Kalenkiewicz, Andrew (NIH/NICHD) [F]
- Re: [AMBER] problem with randomizing velocities (Thu Oct 15 2015 - 08:41:28 PDT)
- [AMBER] problem with randomizing velocities (Fri Oct 02 2015 - 13:58:55 PDT)
Karl Kirschner
- Re: [AMBER] (too) high absolute values for charges using resp and gaussian (Tue Oct 27 2015 - 02:36:36 PDT)
Karolina Markowska
- Re: [AMBER] Tutorial 22 - aMD - how long should it last on Titan Black? (Thu Oct 29 2015 - 08:32:17 PDT)
- [AMBER] Tutorial 22 - aMD - how long should it last on Titan Black? (Thu Oct 29 2015 - 02:35:40 PDT)
- Re: [AMBER] Why is water box getting bigger? (Mon Oct 26 2015 - 05:51:00 PDT)
- Re: [AMBER] Why is water box getting bigger? (Mon Oct 26 2015 - 05:34:42 PDT)
- Re: [AMBER] Why is water box getting bigger? (Fri Oct 23 2015 - 07:26:11 PDT)
- Re: [AMBER] Why is water box getting bigger? (Thu Oct 22 2015 - 06:41:53 PDT)
- Re: [AMBER] Why is water box getting bigger? (Wed Oct 21 2015 - 02:13:49 PDT)
- [AMBER] Why is water box getting bigger? (Mon Oct 19 2015 - 04:57:20 PDT)
Kenneth Huang
- Re: [AMBER] pmemd.cuda.MPI on Comet- MPI dying (Wed Oct 28 2015 - 19:48:31 PDT)
- Re: [AMBER] pmemd.cuda.MPI on Comet- MPI dying (Tue Oct 27 2015 - 09:56:56 PDT)
- Re: [AMBER] pmemd.cuda.MPI on Comet- MPI dying (Thu Oct 22 2015 - 20:39:47 PDT)
- Re: [AMBER] pmemd.cuda.MPI on Comet- MPI dying (Thu Oct 22 2015 - 07:08:11 PDT)
- [AMBER] pmemd.cuda.MPI on Comet- MPI dying (Wed Oct 21 2015 - 09:30:41 PDT)
- Re: [AMBER] Error: ptraj is needed for MMPBSA (Mon Oct 12 2015 - 08:08:12 PDT)
Khabiri, Morteza
- Re: [AMBER] System gets unwrap while iwrap=1 in ti (Fri Oct 16 2015 - 06:52:41 PDT)
- [AMBER] FW: System gets unwrap while iwrap=1 in ti (Thu Oct 15 2015 - 11:46:48 PDT)
- Re: [AMBER] System gets unwrap while iwrap=1 in ti (Thu Oct 15 2015 - 07:02:37 PDT)
- [AMBER] System gets unwrap while iwrap=1 in ti (Thu Oct 15 2015 - 06:18:17 PDT)
koushik kasavajhala
- [AMBER] ff12SB vs ff14SB for protein-ligand MD simulations? (Wed Oct 21 2015 - 18:39:23 PDT)
Krantzman, Kristin D
- Re: [AMBER] Measuring minimum distance between protein and graphene surface (Tue Oct 20 2015 - 15:07:38 PDT)
- Re: [AMBER] Measuring minimum distance between protein and graphene surface (Tue Oct 20 2015 - 11:20:15 PDT)
- [AMBER] Measuring distance between protein and graphene surface (Tue Oct 20 2015 - 11:01:37 PDT)
Kumar cerm
- [AMBER] Steps after: AMBER annealing with restriaints in vocuum.? towards improving the quality of structure with out RDC, Dihedrals (Thu Oct 22 2015 - 08:15:17 PDT)
Lachele Foley
- Re: [AMBER] Glycam force field parameters for derivatives? (Fri Oct 30 2015 - 18:40:35 PDT)
- Re: [AMBER] How do you place two molecules in one water box? (Mon Oct 12 2015 - 12:01:39 PDT)
- Re: [AMBER] Building a structure of levansucrase (1PT2) with a fructosyl residue attached to Asp86 (Sat Oct 03 2015 - 21:17:59 PDT)
Lara rajam
- Re: [AMBER] cpptraj - bridging water (Tue Oct 27 2015 - 08:54:52 PDT)
- [AMBER] cpptraj - bridging water (Mon Oct 26 2015 - 11:56:39 PDT)
- [AMBER] hydrogen bond cpptraj (Wed Oct 07 2015 - 18:18:51 PDT)
li he
- Re: [AMBER] RESP charge calculation (Thu Oct 15 2015 - 18:46:19 PDT)
- Re: [AMBER] RESP charge calculation (Thu Oct 15 2015 - 09:12:48 PDT)
- Re: [AMBER] RESP charge calculation (Wed Oct 14 2015 - 11:22:37 PDT)
- [AMBER] RESP charge calculation (Wed Oct 14 2015 - 11:17:45 PDT)
- Re: [AMBER] RESP charge fitting (Wed Oct 14 2015 - 10:58:30 PDT)
Luciano Costa
- Re: [AMBER] RESP charge calculation (Fri Oct 16 2015 - 19:47:42 PDT)
Mahmood Jasim
- Re: [AMBER] QM/MM Umbrella (Tue Oct 27 2015 - 05:05:38 PDT)
- [AMBER] QM/MM Umbrella (Fri Oct 23 2015 - 04:56:31 PDT)
Mahmoud A. A. Ibrahim
- Re: [AMBER] AMBER14 testing error (Sat Oct 31 2015 - 00:25:22 PDT)
- [AMBER] AMBER14 testing error (Fri Oct 30 2015 - 11:40:41 PDT)
Marcelo Andrade Chagas
- Re: [AMBER] AMBER14 testing error (Fri Oct 30 2015 - 12:06:18 PDT)
- Re: [AMBER] 12-6-4 LJ-type nonbonded model Fe(III)-M(II) (Fri Oct 23 2015 - 15:41:43 PDT)
- Re: [AMBER] 12-6-4 LJ-type nonbonded model Fe(III)-M(II) (Thu Oct 22 2015 - 12:24:17 PDT)
- Re: [AMBER] 12-6-4 LJ-type nonbonded model Fe(III)-M(II) (Thu Oct 22 2015 - 09:37:09 PDT)
- Re: [AMBER] 12-6-4 LJ-type nonbonded model Fe(III)-M(II) (Thu Oct 22 2015 - 09:34:02 PDT)
- Re: [AMBER] 12-6-4 LJ-type nonbonded model Fe(III)-M(II) (Thu Oct 22 2015 - 08:37:28 PDT)
- [AMBER] 12-6-4 LJ-type nonbonded model Fe(III)-M(II) (Thu Oct 22 2015 - 07:34:51 PDT)
MarcZhang
- [AMBER] Why PBSA decomposition takes so long time? (Fri Oct 30 2015 - 03:52:40 PDT)
- Re: [AMBER] Differences on MMPBSA calculation results (Tue Oct 20 2015 - 03:01:03 PDT)
- [AMBER] Differences on MMPBSA calculation results (Mon Oct 19 2015 - 08:00:18 PDT)
- [AMBER] Differences on MMPBSA calculation results (Mon Oct 19 2015 - 07:58:57 PDT)
- Re: [AMBER] Not atom type for Bromine atom in amber GAFF (Thu Oct 15 2015 - 13:29:07 PDT)
- Re: [AMBER] difficulties in generate .prmtop and .inpcrd file (Thu Oct 15 2015 - 13:07:10 PDT)
- [AMBER] Not atom type for Bromine atom in amber GAFF force field? (Thu Oct 15 2015 - 09:42:08 PDT)
- [AMBER] difficulties in generate .prmtop and .inpcrd file for complex using Guassian calculated ligand charges (Thu Oct 15 2015 - 01:23:01 PDT)
Marion, Antoine
- Re: [AMBER] Prepgen difficulty (Mon Oct 12 2015 - 07:22:32 PDT)
Martina Devi
- Re: [AMBER] ions cannot be viewed in gaussview (Sat Oct 31 2015 - 09:08:25 PDT)
- [AMBER] ions cannot be viewed in gaussview (Fri Oct 30 2015 - 07:18:37 PDT)
maryam azimzadehirani
- Re: [AMBER] Replica exchange temperature distribution (Tue Oct 27 2015 - 23:49:39 PDT)
- [AMBER] Replica exchange temperature distribution (Tue Oct 27 2015 - 18:54:33 PDT)
Mochena, Mogus D.
- Re: [AMBER] Problem configuring amber14 (Fri Oct 23 2015 - 06:41:48 PDT)
- [AMBER] Problem configuring amber14 (Wed Oct 21 2015 - 11:11:21 PDT)
Mohammad Salem
- Re: [AMBER] mmpbsa.py error (Sat Oct 31 2015 - 10:24:24 PDT)
- [AMBER] mmpbsa.py error (Fri Oct 30 2015 - 17:08:21 PDT)
- Re: [AMBER] ante-MMPBSA question (Mon Oct 26 2015 - 15:49:23 PDT)
- [AMBER] ante-MMPBSA question (Mon Oct 26 2015 - 15:18:25 PDT)
Mohd Farid Ismail
- Re: [AMBER] Question about mask in cpptraj (Mon Oct 05 2015 - 22:12:19 PDT)
- Re: [AMBER] Question about mask in cpptraj (Sun Oct 04 2015 - 21:19:05 PDT)
- [AMBER] Question about mask in cpptraj (Sun Oct 04 2015 - 20:42:58 PDT)
Naomi Rose Latorraca
- [AMBER] compatibility of targeted MD with GPU amber vs. sander (Fri Oct 23 2015 - 15:13:46 PDT)
Nash, Anthony
- Re: [AMBER] RED-tools (Thu Oct 22 2015 - 13:27:27 PDT)
- Re: [AMBER] RED-tools (Thu Oct 22 2015 - 12:36:40 PDT)
- Re: [AMBER] Correctly deriving force constants for Amber (Thu Oct 15 2015 - 11:58:30 PDT)
- Re: [AMBER] Correctly deriving force constants for Amber (Thu Oct 15 2015 - 11:47:19 PDT)
- [AMBER] Correctly deriving force constants for Amber (Thu Oct 15 2015 - 05:07:22 PDT)
neha chaudhary
- [AMBER] gromacs to amber file format (Tue Oct 20 2015 - 05:07:03 PDT)
Nhai
- Re: [AMBER] how to convert mdcrd to NetCDF trajectory file? (Sun Oct 25 2015 - 12:51:56 PDT)
- Re: [AMBER] CPPTRAJ (Sun Oct 18 2015 - 21:16:37 PDT)
Nicholus Bhattacharjee
- Re: [AMBER] Controlling size of the box (Fri Oct 09 2015 - 01:49:01 PDT)
- [AMBER] Controlling size of the box (Thu Oct 08 2015 - 08:48:31 PDT)
Novosielski, Ryan
- Re: [AMBER] sander missing from AmberTools15? (Fri Oct 16 2015 - 14:26:52 PDT)
- Re: [AMBER] sander missing from AmberTools15? (Fri Oct 16 2015 - 13:51:09 PDT)
- Re: [AMBER] sander missing from AmberTools15? (Fri Oct 16 2015 - 13:14:56 PDT)
- Re: [AMBER] sander missing from AmberTools15? (Fri Oct 16 2015 - 12:55:59 PDT)
- [AMBER] sander missing from AmberTools15? (Fri Oct 16 2015 - 12:44:38 PDT)
Osman, Roman
- Re: [AMBER] Atom 1512 was assigned a lower molecule # than previous atom (Mon Oct 05 2015 - 12:15:01 PDT)
- [AMBER] Atom 1512 was assigned a lower molecule # than previous atom (Mon Oct 05 2015 - 11:51:19 PDT)
Pengfei Li
- Re: [AMBER] Metal Ion Model (Fri Oct 30 2015 - 12:57:07 PDT)
- Re: [AMBER] 12-6-4 LJ-type nonbonded model Fe(III)-M(II) (Sat Oct 24 2015 - 07:23:41 PDT)
- Re: [AMBER] Metal Ion Model (Fri Oct 23 2015 - 12:28:42 PDT)
- Re: [AMBER] 12-6-4 LJ-type nonbonded model Fe(III)-M(II) (Thu Oct 22 2015 - 13:58:17 PDT)
- Re: [AMBER] 12-6-4 LJ-type nonbonded model Fe(III)-M(II) (Thu Oct 22 2015 - 07:36:43 PDT)
Progress Zhang
- [AMBER] Atom match error in MMPBSA calculation (Thu Oct 22 2015 - 14:31:52 PDT)
psu4.uic.edu
- Re: [AMBER] Halogen bond force field in AMBER (Wed Oct 28 2015 - 23:03:39 PDT)
- Re: [AMBER] Best suitable 'igb' value for MMPBSA.py calculation (Sat Oct 24 2015 - 13:10:48 PDT)
Rahul Ramesh
- Re: [AMBER] CpHMD for non protein residues (Sun Oct 18 2015 - 15:22:15 PDT)
- Re: [AMBER] CpHMD for non protein residues (Fri Oct 16 2015 - 10:57:57 PDT)
- [AMBER] CpHMD for non protein residues (Thu Oct 15 2015 - 20:43:18 PDT)
- Re: [AMBER] CpHMD for non protein residues (Sun Oct 04 2015 - 17:30:25 PDT)
- [AMBER] CpHMD for non protein residues (Sun Oct 04 2015 - 14:42:42 PDT)
Ray Luo, Ph.D.
- Re: [AMBER] Best suitable 'igb' value for MMPBSA.py calculation (Fri Oct 23 2015 - 11:23:29 PDT)
- Re: [AMBER] Differences on MMPBSA calculation results (Tue Oct 20 2015 - 12:13:54 PDT)
Renato Freitas
- [AMBER] 1-4 nonbonded interactions does not cancel in MMPBSA calculation (Mon Oct 19 2015 - 14:22:51 PDT)
Repic Matej
- [AMBER] RED-tools (Mon Oct 19 2015 - 00:21:41 PDT)
- Re: [AMBER] Real-time hydrogen bond formation using VMD (Wed Oct 14 2015 - 00:06:37 PDT)
- Re: [AMBER] Temperature fluctuations in stage heating (Tue Oct 13 2015 - 02:19:49 PDT)
- Re: [AMBER] /share/apps/amber/amber14/bin/sander.MPI: error while loading shared libraries: libmpi_cxx.so.1: cannot open shared object file: No such file or directory (Thu Oct 01 2015 - 02:21:13 PDT)
Robert Arbon
- Re: [AMBER] QMMM with inorganic molecules (Thu Oct 29 2015 - 02:27:14 PDT)
- [AMBER] QMMM with inorganic molecules (Tue Oct 27 2015 - 10:09:42 PDT)
Robert Molt
- Re: [AMBER] Elementary VMD Problem with Amber Trajectory (Fri Oct 30 2015 - 16:25:06 PDT)
- [AMBER] Elementary VMD Problem with Amber Trajectory (Fri Oct 30 2015 - 14:24:31 PDT)
- [AMBER] Leap PDB Input Error (Fri Oct 16 2015 - 16:13:31 PDT)
- Re: [AMBER] Documentation on Prepin File Format (Fri Oct 16 2015 - 05:19:32 PDT)
- [AMBER] Documentation on Prepin File Format (Fri Oct 16 2015 - 05:00:19 PDT)
- Re: [AMBER] Ho Atom Inclusion in PDB from Leap (Wed Oct 14 2015 - 15:20:09 PDT)
- [AMBER] Ho Atom Inclusion in PDB from Leap (Wed Oct 14 2015 - 11:31:00 PDT)
- [AMBER] Prepgen difficulty (Sun Oct 11 2015 - 08:41:48 PDT)
Romero, Raquel
- Re: [AMBER] Membrane protein imagining problems (Tue Oct 20 2015 - 04:51:20 PDT)
- [AMBER] Membrane protein imagining problems (Sun Oct 18 2015 - 15:33:09 PDT)
Ross Walker
- Re: [AMBER] Tutorial 22 - aMD - how long should it last on Titan Black? (Thu Oct 29 2015 - 08:08:31 PDT)
- Re: [AMBER] pmemd.cuda.MPI on Comet- MPI dying (Tue Oct 27 2015 - 10:01:54 PDT)
- Re: [AMBER] AmberTools 15, Mac El Captain and Fink (Mon Oct 26 2015 - 16:15:22 PDT)
- Re: [AMBER] 12-6-4 LJ-type nonbonded model Fe(III)-M(II) (Fri Oct 23 2015 - 15:48:57 PDT)
- Re: [AMBER] pmemd.cuda.MPI on Comet- MPI dying (Thu Oct 22 2015 - 21:37:32 PDT)
- Re: [AMBER] pmemd.cuda.MPI on Comet- MPI dying (Thu Oct 22 2015 - 09:16:53 PDT)
- Re: [AMBER] pmemd.cuda.MPI on Comet- MPI dying (Wed Oct 21 2015 - 14:14:28 PDT)
- Re: [AMBER] Random Number Generator Flag Ig (Fri Oct 16 2015 - 09:25:03 PDT)
- Re: [AMBER-Developers] [AMBER] problem with randomizing velocities (Thu Oct 15 2015 - 10:00:41 PDT)
- Re: [AMBER] No Internet Access (Thu Oct 15 2015 - 07:59:22 PDT)
- [AMBER] SC15 Call for abstracts - "Producing High-Performance and Sustainable Software for Molecular Simulation" (Mon Oct 05 2015 - 11:10:41 PDT)
- Re: [AMBER] Problem with VDW energy (Fri Oct 02 2015 - 11:04:45 PDT)
Sara Omar
- [AMBER] Pairwise energy decomposition (Mon Oct 05 2015 - 22:28:09 PDT)
Scott Brozell
- Re: [AMBER] SIGSEGV: Segmentation Fault (Wed Oct 07 2015 - 17:53:42 PDT)
shahab shariati
- Re: [AMBER] how to convert mdcrd to NetCDF trajectory file? (Sun Oct 25 2015 - 10:39:17 PDT)
- Re: [AMBER] how to convert mdcrd to NetCDF trajectory file? (Sun Oct 25 2015 - 10:19:19 PDT)
- [AMBER] how to convert mdcrd to NetCDF trajectory file? (Sun Oct 25 2015 - 10:16:42 PDT)
Shahryar Alavi
- [AMBER] No Internet Access (Thu Oct 15 2015 - 01:27:00 PDT)
Sidhu, Khushwant (Dr.)
- [AMBER] h-bond calculation - tokenise error (Fri Oct 09 2015 - 07:57:40 PDT)
Sofia Vasilakaki
- [AMBER] QM/MM performance (Sun Oct 04 2015 - 04:23:02 PDT)
Soumendranath Bhakat
- Re: [AMBER] how to convert mdcrd to NetCDF trajectory file? (Sun Oct 25 2015 - 13:47:58 PDT)
stecue.gmail.com
- Re: [AMBER] resp input format 16I5 (Fri Oct 09 2015 - 09:08:58 PDT)
- [AMBER] resp input format 16I5 (Fri Oct 09 2015 - 07:30:54 PDT)
Steven Cole Mercer
- [AMBER] SIGSEGV: Segmentation Fault (Wed Oct 07 2015 - 16:46:12 PDT)
Steven M. Graham
- Re: [AMBER] RED-tools (Sun Oct 25 2015 - 15:33:13 PDT)
Sun
- [AMBER] tinker_to_amber does not work (Wed Oct 14 2015 - 14:52:10 PDT)
Sun
- Re: [AMBER] tinker_to_amber does not work (Thu Oct 15 2015 - 07:21:26 PDT)
Surasak Chunsrivirot
- Re: [AMBER] Building a structure of levansucrase (1PT2) with a fructosyl residue attached to Asp86 (Mon Oct 05 2015 - 00:53:49 PDT)
- [AMBER] Building a structure of levansucrase (1PT2) with a fructosyl residue attached to Asp86 (Thu Oct 01 2015 - 21:28:12 PDT)
Tan Yaw Sing
- [AMBER] R.E.D. server down or out? (Sun Oct 18 2015 - 19:43:19 PDT)
Thomas Cheatham
- Re: [AMBER] CPPTRAJ (Sun Oct 18 2015 - 21:41:09 PDT)
- Re: [AMBER] donor and acceptor masks (Sat Oct 17 2015 - 09:41:47 PDT)
Tyler Luchko (Lists)
- Re: [AMBER] Polardecomp in 3D-RISM fails (Thu Oct 22 2015 - 12:47:53 PDT)
Ucisik, Melek Nihan
- [AMBER] Units of the dipole moment? (Thu Oct 01 2015 - 10:02:23 PDT)
V. Kumar
- [AMBER] [AMEBR] Amino acid side-chain carbonyl C=O(ASP, GLU) and side-cahin -HN (LYS, ARG) close proximity (Thu Oct 29 2015 - 05:05:20 PDT)
- [AMBER] Guanine base pair planarity in G-guadruplex (Thu Oct 29 2015 - 04:26:47 PDT)
- [AMBER] Guanine base pair planarity in G-guadruplex (Wed Oct 28 2015 - 09:02:10 PDT)
- Re: [AMBER] how to convert mdcrd to NetCDF trajectory file? (Mon Oct 26 2015 - 02:14:26 PDT)
- Re: [AMBER] Steps after: AMBER annealing with restriaints in vocuum.? towards improving the quality of structure with out RDC, Dihedrals (Sat Oct 24 2015 - 16:39:37 PDT)
- [AMBER] Steps after: AMBER annealing with restraints in vacuum.? towards improving the quality of structure with out RDC, Dihedrals (Fri Oct 23 2015 - 02:41:36 PDT)
- [AMBER] Steps after: AMBER annealing with restraints in vacuum.? towards improving the quality of structure with out RDC, Dihedrals (Fri Oct 23 2015 - 02:22:05 PDT)
Vitaly V. Chaban
- Re: [AMBER] How to prevent the water molecules entering into the binding pocket during the MD simulation ? (Fri Oct 30 2015 - 03:48:54 PDT)
Vlad Cojocaru
- Re: [AMBER] Tutorial 3 section 1 (Tue Oct 20 2015 - 05:03:15 PDT)
- Re: [AMBER] MMPBSA tutorial A3.2 (Tue Oct 20 2015 - 04:50:42 PDT)
Vu Truong
- Re: [AMBER] "Vlimit exceeded for step..." error (Fri Oct 09 2015 - 12:16:31 PDT)
- [AMBER] "Vlimit exceeded for step..." error (Thu Oct 08 2015 - 13:21:47 PDT)
wliu
- Re: [AMBER] The formulas of per-residue and pairwise-residue free energy decomposition in mm_pbsa (Tue Oct 27 2015 - 23:14:27 PDT)
- [AMBER] The formulas of per-residue and pairwise-residue free energy decomposition in mm_pbsa (Mon Oct 19 2015 - 23:33:20 PDT)
Wong Li Zhe
- [AMBER] CPPTRAJ (Sun Oct 18 2015 - 21:06:48 PDT)
- [AMBER] Minimization (Wed Oct 14 2015 - 02:17:34 PDT)
- [AMBER] Restraints (Fri Oct 09 2015 - 06:50:03 PDT)
- [AMBER] Restraints (Fri Oct 09 2015 - 06:31:47 PDT)
- [AMBER] Restraints (Fri Oct 09 2015 - 06:27:28 PDT)
- [AMBER] Restraints (Fri Oct 09 2015 - 06:20:02 PDT)
- Re: [AMBER] Restraints (Fri Oct 09 2015 - 05:48:41 PDT)
- [AMBER] Restraints (Fri Oct 09 2015 - 05:23:53 PDT)
Wu, Xiongwu (NIH/NHLBI) [E]
- Re: [AMBER] SGLDg (Wed Oct 21 2015 - 08:54:18 PDT)
Xing
- Re: [AMBER] compare two trajectories (Thu Oct 15 2015 - 19:29:08 PDT)
- Re: [AMBER] RESP charge fitting (Wed Oct 14 2015 - 08:03:40 PDT)
Ye Mei
- Re: [AMBER] (too) high absolute values for charges using resp and gaussian (Tue Oct 27 2015 - 03:02:40 PDT)
Yip Yew Mun
- [AMBER] What is the formula for calculating EPtot? (Thu Oct 15 2015 - 02:26:29 PDT)
yunshi11 .
- [AMBER] Glycam force field parameters for derivatives? (Thu Oct 29 2015 - 21:51:36 PDT)
- Re: [AMBER] ff12SB vs ff14SB for protein-ligand MD simulations? (Wed Oct 21 2015 - 18:28:34 PDT)
- [AMBER] ff12SB vs ff14SB for protein-ligand MD simulations? (Wed Oct 21 2015 - 18:10:07 PDT)
崔克新
- [AMBER] If it's possible to add restraint on the steered MD ? (Fri Oct 23 2015 - 02:06:55 PDT)
- Re: [AMBER] [SPAM] AMBER Digest, Vol 1365, Issue 1 (Wed Oct 14 2015 - 02:10:05 PDT)
- [AMBER] How to do a QMMM calculation with a dynamic QM region (Wed Oct 07 2015 - 02:18:00 PDT)

Amber Archive Oct 2015 by author