Dear Sir
wish you are fine !
Actually, I wanted to know how can Amber differentiate between terminal
Oxygens of certain Amino acid.
Suppose that I have two terminal Oxygens
one called O from C-O
the other called OXT from C=O
and they are in resonance of the double bond.
Does amber differentiate between these tow atoms ?
what is the charge on each of them ?!
Or
Are they treated similarly with the same charge and electrostatic
interactions?
Best Regards
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Oct 22 2015 - 07:30:04 PDT